PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015215

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 342aa MW: 38042.7 Da PI: 6.3259

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681258	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.9e-10	152	208	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l s Lsa015215 152 KRAKRILANRQSAARSKERKARYMSELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 208 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-16	148	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	150	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.6E-8	150	205	No hit	No description
Pfam	PF00170	1.0E-8	152	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	152	203	No hit	No description
CDD	cd14703	8.60E-24	153	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MQDPSNLNSK PQNAAAFPFR PSHHRRAHSE VNFRLPDDLD LASDPYDAPS ESFEELGSEE 60 DLFCTYMDIE KLGSNLNDGG ALDNGRINNA GGGGGPSEDH NGGGDDGERT GTRPRHRHSN 120 SVDSSSFLSE SIEAKKAMAP DKLAELWTVD PKRAKRILAN RQSAARSKER KARYMSELER 180 KVQTLQTEAT TLSAQLTLFQ RDTTGLSSEN TELKMRLQAM EQQAHLRDAL NEALKQEVER 240 LRMATGEIAS CSDGYNLGMH QNQHHSPYNH QSNFFTNHQQ HPEYHHQSHP LLAATHLQQL 300 QDPLGRFQGL DISSRGRVPN PHLVKSEGPS ISVSESESSS TF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MQDPSNLNSK PQNAAAFPFR PSHHRRAHSE VNFRLPDDLD LASDPYDAPS ESFEELGSEE  60
DLFCTYMDIE KLGSNLNDGG ALDNGRINNA GGGGGPSEDH NGGGDDGERT GTRPRHRHSN  120
SVDSSSFLSE SIEAKKAMAP DKLAELWTVD PKRAKRILAN RQSAARSKER KARYMSELER  180
KVQTLQTEAT TLSAQLTLFQ RDTTGLSSEN TELKMRLQAM EQQAHLRDAL NEALKQEVER  240
LRMATGEIAS CSDGYNLGMH QNQHHSPYNH QSNFFTNHQQ HPEYHHQSHP LLAATHLQQL  300
QDPLGRFQGL DISSRGRVPN PHLVKSEGPS ISVSESESSS TF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736107.1	0.0	bZIP transcription factor 18-like
Swissprot	O22873	1e-109	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2J6KAM3	0.0	A0A2J6KAM3_LACSA; Uncharacterized protein
STRING	VIT_13s0067g02900.t01	1e-138	(Vitis vinifera)
STRING	XP_010252066.1	1e-137	(Nelumbo nucifera)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]