PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015173
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 290aa    MW: 32413.3 Da    PI: 6.2833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681805PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-2099148255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+   k +r++lg+f tae+Aa a+++a++k++g
  Lsa015173  99 HYRGVRQRP-WGKWAAEIRDPN---KGARVWLGTFETAEGAALAYDQAALKFKG 148
                7********.**********93...25************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3398157IPR001471AP2/ERF domain
PROSITE profilePS5103224.72499156IPR001471AP2/ERF domain
SMARTSM003803.5E-3999162IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2299157IPR016177DNA-binding domain
PfamPF008474.1E-1499148IPR001471AP2/ERF domain
CDDcd000189.87E-3499157No hitNo description
PRINTSPR003673.4E-11100111IPR001471AP2/ERF domain
PRINTSPR003673.4E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDSGRSMWEQ KPEHEGDEII YREEVDRDHE SQSSSYRHEW STTSNLHPHH QIVGATVVAD  60
DVYGDFFPNY SAQPPPSTMV TPHLQNQQPI QQETTVRRHY RGVRQRPWGK WAAEIRDPNK  120
GARVWLGTFE TAEGAALAYD QAALKFKGSK AKLNFPERFQ GRSELRFLTS TTTSTAAAAP  180
APAISPGSQP QPPINHTIAT SYPDFLQYAQ LLSSNDAQLP YFASTLYHQN NINATQTYSD  240
YASHQSSSSA SMVGSSTMSF QPNYSDNPSL FSDSGSDPWT RGAFDDSNRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2698158162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763827.10.0ethylene-responsive transcription factor ERF113-like
TrEMBLA0A2J6LDT10.0A0A2J6LDT1_LACSA; Uncharacterized protein
STRINGcassava4.1_014632m2e-53(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-41related to AP2 6l