PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015152

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 312aa MW: 35070.4 Da PI: 8.9246

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685970	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-18893	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.2	4.9e-15	242	286	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+ e Lsa015152 242 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLRREQ 286 79****************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-14	236	286	No hit	No description
PRINTS	PR00041	9.3E-5	237	253	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	1.4E-12	238	310	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.84	240	285	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.00E-17	242	272	No hit	No description
SuperFamily	SSF57959	5.88E-11	242	287	No hit	No description
Pfam	PF00170	7.7E-13	242	287	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	245	260	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	9.3E-5	255	275	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	9.3E-5	275	292	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGSHGGGGGN GGTQHPKSDG LSKQGPLYNL TLDEVQQQLG DLGKPLSSMN LDELLKNVWS 60 AEAESNQGPV HQHTSSMPDL SKKTVDELWQ DIQKKKNTTH SSVSNDNNLE RKTTREKQPT 120 LGEMTLEDFL AKAGIVAESS HEKKKKNPVS VAGVESIPLP QQNINPQQAQ WMQQYQIQPI 180 QQQPQHVFMP GHHQVQQPLP METAYSDTQM TMSPLMGTLS DTQIPGKKRV ASGDVMEKTV 240 ERRQKRMIKN RESAARSRAR KQAYTHELEN KVSRLEEENE RLRREQEAEN VLPCVPPPEP 300 KYQLRRTTSA SF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742517.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-93	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2J6JWD7	0.0	A0A2J6JWD7_LACSA; Uncharacterized protein
STRING	XP_010251669.1	1e-109	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-76	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]