PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa015126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27486.8 Da PI: 8.1962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 81 | 130 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+G+r++ +g+W+AeIrdp + r++lg++ t+eeAaka+++a+++++g+ Lsa015126 81 YRGIRRRQ-WGKWAAEIRDPQ----QgVRVWLGTYNTPEEAAKAYDEAARRIRGN 130 9****887.**********94....25*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-22 | 80 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-32 | 80 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 80 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 80 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-30 | 81 | 136 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 81 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MCGGAVISDI DPFVKRSRKV NANDLWNELD TYNRFAWNIK PPSPVRNRTT MNDYTPNSNQ 60 GTTKQTEKPM EKKSKPRKNL YRGIRRRQWG KWAAEIRDPQ QGVRVWLGTY NTPEEAAKAY 120 DEAARRIRGN KAKLNFPPPY TPPPAKKLCV ETTDSNLSIN YEPPSPYEFK ATTESTQPMA 180 HGQMLPPPLD YGGLHRHPAV DEHEFKEQIL NLETFLGLEH ESTQFDESGD LWALDDFPAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 81 | 140 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023734095.1 | 0.0 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A2J6KEW5 | 1e-180 | A0A2J6KEW5_LACSA; Uncharacterized protein | ||||
STRING | Gorai.011G193600.1 | 6e-56 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-45 | ethylene-responsive element binding protein |