PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015107
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 291aa    MW: 30759.8 Da    PI: 9.8571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685476PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-061051171527
                -TTTTT-SS-SSS CS
    zf-CCCH  15 CkyGdrCkFaHgp 27 
                Ck+Gd+C+FaH++
  Lsa015107 105 CKFGDKCRFAHSE 117
                ***********95 PP
2zf-CCCH33.76e-11262286227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt++C +f + G+C +G+rC+FaHg+
  Lsa015107 262 KTKICENFVK-GQCTFGERCHFAHGQ 286
                89********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.74259No hitNo description
PROSITE profilePS5010312.66290118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-1091120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-691120IPR000571Zinc finger, CCCH-type
SMARTSM003560.3892117IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4105117IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-14159234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.1E-15162231IPR004088K Homology domain, type 1
SMARTSM003226.2E-10162232IPR004087K Homology domain
PROSITE profilePS5008413.921163227IPR004088K Homology domain, type 1
CDDcd001058.52E-13165228No hitNo description
PfamPF000131.8E-9165229IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.4E-14259290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-8259290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061260287IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7260286IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEFGGRKRGR QDGGWNGAPK RPRDEMESFT PGVGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGGGGKQL TNMGVGPALG RKPPFAADTP VKSKLCNKIN TPEGCKFGDK CRFAHSEVEL  120
TLSSKNKPFY QDPRAQLSTA AGPGPGPVSY GGGGVAAANF GQSATAKISI DAALAGPIIG  180
KGGVNSKQIC HLTGVKLAIR DHETDQNQRN IELEGTFDQI KQASAMVHEL IVNLGTNGAP  240
PRGGGGFQQQ QGHAHAGVNK IKTKICENFV KGQCTFGERC HFAHGQNELR R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734753.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2J6KDF20.0A0A2J6KDF2_LACSA; Uncharacterized protein
STRINGXP_010265899.11e-108(Nelumbo nucifera)