PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa015083 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ARF | ||||||||||||
Protein Properties | Length: 835aa MW: 93128.1 Da PI: 6.2099 | ||||||||||||
Description | ARF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.3e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ Lsa015083 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 222 99*****************************8544444..48************************************************..8899999* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Lsa015083 223 LGIRRA 228 ***997 PP | |||||||
2 | Auxin_resp | 117.1 | 1.5e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wrs+k Lsa015083 253 AAHAAATNSCFTIFYNPRASPCEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-49 | 111 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 1.3E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-6 | 700 | 791 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.1E-7 | 700 | 779 | No hit | No description |
PROSITE profile | PS51745 | 22.5 | 704 | 788 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MKLSTSGLGQ QPHEGEKKCL NSELWHACAG PLVSLPIVGS RVVYFPQGHS EQVAATTNKE 60 IDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT FLPVELGTPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPCEFVIPL SKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIG DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG ASSFQDSRDD GVNGMTWLRG EPGEQGLNSL NFQSVGMFPW 420 MQQRVDPSFL QSNLNQQYQA ALAAGLQNLG SGDALKQQIL QFQQQQQQQQ QQIQYSPSGT 480 SNPLFQQSQQ LIPQQFVHGQ TQIQQVNTQP EEHPQPQQQQ QSSYPESYLL QHHERPQSHA 540 FMDPNTKFAP PSMQNMLGSL ITSEGSGNLL SFSRAGPTLT EQHPSNQNQN QQSWVSRFAQ 600 SQPNLSSSSP APSLSYQEKN VEEASSLDTQ TQGLFGGTNI DSSVGLLQET DIATTTTTTT 660 MTMAMASPAS GFQNNSSYFG YMQDSSELLH ATTGAQIDPS NPNRTFVKVY KSGSVGRSLD 720 ISRFHSYPEL KEELEQMFNV EGLLQDPQRS GWQLVFVDRE NDVLLLGDGP WEAFVNSVWY 780 IKILSPEDVL KLGKQELESF TQNSGGERIG NDGHGHGHGG RELSGLPPSM GSLDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023767431.1 | 0.0 | auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2J6L6C4 | 0.0 | A0A2J6L6C4_LACSA; Auxin response factor | ||||
STRING | XP_009789648.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |