PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa014965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18653.1 Da PI: 9.9912 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 45 | 95 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ + r +lg+f+taeeAa+a+++a+ +l+g+ Lsa014965 45 HYRGVRKRP-WGRFAAEIRDpWK----KSRRWLGTFDTAEEAARAYDEAAFSLRGA 95 69*******.**********883....5999**********************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.62E-22 | 45 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-34 | 45 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.59E-31 | 45 | 101 | No hit | No description |
Pfam | PF00847 | 2.6E-13 | 45 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-31 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-11 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-11 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MMIDTLHHDH RRHLFSDATK DEAPVTTPTV PAPASHKHKP RKEFHYRGVR KRPWGRFAAE 60 IRDPWKKSRR WLGTFDTAEE AARAYDEAAF SLRGAKAKMN FCVSLAAFSP PVAEKKDVQS 120 NFSALCYHPS SNDSVNLDSE EDRKLMTSRK PFMFDLNLPA PLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 45 | 101 | 5 | 62 | ATERF1 |
3gcc_A | 5e-22 | 45 | 101 | 5 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023766548.1 | 1e-119 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A2J6L7X4 | 1e-117 | A0A2J6L7X4_LACSA; Uncharacterized protein | ||||
STRING | XP_004493753.1 | 1e-37 | (Cicer arietinum) | ||||
STRING | XP_009618026.1 | 1e-37 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-22 | ERF domain protein 12 |