PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014867

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Nin-like

Protein Properties

Length: 553aa MW: 62522.5 Da PI: 5.1745

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691765	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	335	385	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl +l++yF +++kdAAk++gvc+T+LKriCR++GI+RWP+Rkik++ Lsa014867 335 EKNISLPVLQQYFPGSLKDAAKNIGVCPTTLKRICREHGIMRWPSRKIKKV 385 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	324	405	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-24	337	385	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.36E-22	454	544	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.5E-20	455	540	No hit	No description
PROSITE profile	PS51745	20.462	458	541	IPR000270	PB1 domain
SMART	SM00666	1.4E-22	458	541	IPR000270	PB1 domain
Pfam	PF00564	6.8E-17	459	540	IPR000270	PB1 domain
CDD	cd06407	1.87E-32	459	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MFGSIKESGL DFINMDENSY EFSFTNPSDS SSSYLNSYFE DEKDVKPLGT SILDYTYFDN 60 QTPETLPSQA FEGYDFMIQQ KLEDYNGSYE MVLAEIREVL KAVCDIHSLP MAQTWSLCGQ 120 QGQRECHNQS SACISVINSA SYVLDPNVLG FYEACSDLHL LRGEGIAGKA LGTNQPCFAT 180 DITAFSATEY PLSGPARVFG LGGAVAIRLR STYLGAVDFI LEFFLPNSCR NDEEQKNMLS 240 SISSVMQNVS TSLRVVNDDE LVEEDESSCS WISKAQKRGE SFIVSFKEEP QEQEEFKMIN 300 QFDYTKQIEQ KSKPKGRKRS LGVRKSEEKR RVKPEKNISL PVLQQYFPGS LKDAAKNIGV 360 CPTTLKRICR EHGIMRWPSR KIKKVGHSLK KLQTIIDSVQ GAEGTIQLRS FYTNFPELSS 420 PKPSSSCGSP NSVQEERKSR ERTQREKLSD YDHSNEGAFR VKVVYGEEKI RLSVSKDCGF 480 WDLKREVMRR FGMNDLNCVT LKYLDDDLEW VLLTCDADLE ECMDINMVSK KCSIKVLVHE 540 SFHPESGSSF TGC

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MFGSIKESGL DFINMDENSY EFSFTNPSDS SSSYLNSYFE DEKDVKPLGT SILDYTYFDN  60
QTPETLPSQA FEGYDFMIQQ KLEDYNGSYE MVLAEIREVL KAVCDIHSLP MAQTWSLCGQ  120
QGQRECHNQS SACISVINSA SYVLDPNVLG FYEACSDLHL LRGEGIAGKA LGTNQPCFAT  180
DITAFSATEY PLSGPARVFG LGGAVAIRLR STYLGAVDFI LEFFLPNSCR NDEEQKNMLS  240
SISSVMQNVS TSLRVVNDDE LVEEDESSCS WISKAQKRGE SFIVSFKEEP QEQEEFKMIN  300
QFDYTKQIEQ KSKPKGRKRS LGVRKSEEKR RVKPEKNISL PVLQQYFPGS LKDAAKNIGV  360
CPTTLKRICR EHGIMRWPSR KIKKVGHSLK KLQTIIDSVQ GAEGTIQLRS FYTNFPELSS  420
PKPSSSCGSP NSVQEERKSR ERTQREKLSD YDHSNEGAFR VKVVYGEEKI RLSVSKDCGF  480
WDLKREVMRR FGMNDLNCVT LKYLDDDLEW VLLTCDADLE ECMDINMVSK KCSIKVLVHE  540
SFHPESGSSF TGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761090.1	0.0	protein NLP4-like
TrEMBL	A0A2J6LJQ5	0.0	A0A2J6LJQ5_LACSA; Uncharacterized protein
STRING	GLYMA04G00210.3	1e-132	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-110	Nin-like family protein