PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014848
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 534aa    MW: 60331.9 Da    PI: 4.624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693515PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-17725PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4371.4e-1331675343374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                elL+ecA avs+g+le+a++++++l++++s dg+p qR+ ay++eALaar+a s+++lykal+++e +   s+++l+a+++++ev+P+++f++ +aN aI
  Lsa014848 167 ELLFECAIAVSEGNLEEASEMINELRQTVSIDGEPSQRISAYMVEALAARVAVSGKGLYKALKCKEPP---STDRLSAMQVLFEVCPCFRFGFTAANGAI 263
                79*****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                lea++ge++vHiiDfdi+qG Q+++Llq+La + +++p+lR+Tgv++pes+      l+++g rL+k+Ae+l+++fef++ va +++ +++e+L++++gE
  Lsa014848 264 LEAFNGEKQVHIIDFDINQGSQYITLLQTLAGQ-NQKPRLRLTGVDDPESVqrPIGGLNHIGLRLEKLAESLDLEFEFTA-VAADTAVISPEMLKCRSGE 361
                *******************************97.667************99888899***********************.7999*************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                a++Vn+++qlh+++desv++ ++rd++L++vksl+Pk+v+vveq++++n+++Fl+rf ea +yysa+fd+l+a+l+res+er++vE+++l+r+ivn++ac
  Lsa014848 362 AVIVNFAFQLHHMPDESVTVVNQRDQLLRMVKSLNPKLVTVVEQDMNTNTAPFLHRFHEAYNYYSAMFDCLDATLSRESQERVNVEKQCLARDIVNIIAC 461
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg+er+er e  +kW++r+++aGF+++p+s +++++++ l+++++++ y+++ e +++ +gW+d+ L+++SaWr
  Lsa014848 462 EGEERIERYEVSGKWKARMMMAGFREYPISVSVNDSIRELIKMYSDR-YKMKVETNAIHFGWEDKVLIVASAWR 534
                *********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.6139515IPR005202Transcription factor GRAS
PfamPF035144.7E-131167534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MIRSVSPYGS RKLYLLNSTK ETSGFDSGVS QILYSSTQSY SNNTYNPTNY FLDSPTDEQV  60
SINPLTSSYE SNIDPEYPLT ENFEELSYNE DDIRLKLKLQ ELEHALLDDN DNSAPNRSME  120
IETEWGYSLH ESPKESSSYD SYVSSTSSAK EMFVARAQRA QATTPKELLF ECAIAVSEGN  180
LEEASEMINE LRQTVSIDGE PSQRISAYMV EALAARVAVS GKGLYKALKC KEPPSTDRLS  240
AMQVLFEVCP CFRFGFTAAN GAILEAFNGE KQVHIIDFDI NQGSQYITLL QTLAGQNQKP  300
RLRLTGVDDP ESVQRPIGGL NHIGLRLEKL AESLDLEFEF TAVAADTAVI SPEMLKCRSG  360
EAVIVNFAFQ LHHMPDESVT VVNQRDQLLR MVKSLNPKLV TVVEQDMNTN TAPFLHRFHE  420
AYNYYSAMFD CLDATLSRES QERVNVEKQC LARDIVNIIA CEGEERIERY EVSGKWKARM  480
MMAGFREYPI SVSVNDSIRE LIKMYSDRYK MKVETNAIHF GWEDKVLIVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6317153324377Protein SCARECROW
5b3h_D6e-6317153324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755707.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2J6LW180.0A0A2J6LW18_LACSA; Uncharacterized protein
STRINGXP_009766061.10.0(Nicotiana sylvestris)
STRINGXP_009628410.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]