PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014838
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 426aa    MW: 48151.5 Da    PI: 6.7299
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-9807PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.48.5e-140264231374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg++e a+ +L ++s+l+sp+gd+mqR+a+yf+eALa+r++++++++ykal++++ +    se++ ++k+f+e +P+lk++++++Nq
  Lsa014838  26 LIHLLLTCAKHVASGNFEHANIALDQISHLSSPEGDTMQRIASYFAEALANRILKTWPGIYKALHSTKIP--FASENILVRKMFFEYFPYLKVAFVITNQ 123
                689*************************************************************999998..599************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I ea+ege+ vH+iD+++s+++QW aLl+ L++Rpegpp+lRiTgv++    +ke l ++++ L + Ae+l++pf+fn+ + +++e+l++e+L+vk+gE
  Lsa014838 124 VIIEAMEGEKIVHVIDLNASEPTQWRALLRDLSARPEGPPHLRITGVHQ----QKEVLDQMARILIEEAEKLDIPFQFNP-ILSKIENLDFEKLNVKTGE 218
                *************************************************....9**************************.799**************** PP

       GRAS 201 alaVnlvlqlhrll...............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                ala+++vlqlh+ll                               ++s  l+s++d++L+ +++lsPkv++v+eq+++hn++s++er++e+l++y+alfd
  Lsa014838 219 ALAISSVLQLHSLLapeevtpttkdtngisqkdlgngyspsqdtaSSSPFLSSKIDSFLNNLRGLSPKVMIVAEQDSNHNKSSLMERLSESLYFYAALFD 318
                *****************************************9997777777889********************************************** PP

       GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                +le++lpr+s er kvE++l+g+ei+n++aceg er+erhe+l kW +rl+ +GF+ vpls++a  qa++l++ ++ dg r++ee+g++v++W+drpL+s
  Lsa014838 319 CLESTLPRTSMERLKVEKMLFGEEIKNIIACEGGERKERHEKLDKWVQRLDLSGFGCVPLSYYALLQARRLVQGYSCDGCRIKEENGCVVMCWQDRPLFS 418
                **************************************************************************************************** PP

       GRAS 370 vSaWr 374
                vSaW+
  Lsa014838 419 VSAWK 423
                ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.6151403IPR005202Transcription factor GRAS
PfamPF035142.9E-13726423IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSISPLTGSP YPWLKELKSE ERGLCLIHLL LTCAKHVASG NFEHANIALD QISHLSSPEG  60
DTMQRIASYF AEALANRILK TWPGIYKALH STKIPFASEN ILVRKMFFEY FPYLKVAFVI  120
TNQVIIEAME GEKIVHVIDL NASEPTQWRA LLRDLSARPE GPPHLRITGV HQQKEVLDQM  180
ARILIEEAEK LDIPFQFNPI LSKIENLDFE KLNVKTGEAL AISSVLQLHS LLAPEEVTPT  240
TKDTNGISQK DLGNGYSPSQ DTASSSPFLS SKIDSFLNNL RGLSPKVMIV AEQDSNHNKS  300
SLMERLSESL YFYAALFDCL ESTLPRTSME RLKVEKMLFG EEIKNIIACE GGERKERHEK  360
LDKWVQRLDL SGFGCVPLSY YALLQARRLV QGYSCDGCRI KEENGCVVMC WQDRPLFSVS  420
AWKCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-70144257381Protein SCARECROW
5b3h_A5e-7094251380Protein SCARECROW
5b3h_D5e-7094251380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728244.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2J6KSQ70.0A0A2J6KSQ7_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000118390.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]