PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014741
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 418aa    MW: 45209.8 Da    PI: 8.4578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691657PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-947PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.1e-105580126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C f++rtG C yG+ C+F+H+
  Lsa014741 55 PGEPDCIFYLRTGLCGYGNICRFNHP 80
               5789*********************9 PP
2zf-CCCH36.76.8e-12101125327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tGtCkyG++Ck++H++
  Lsa014741 101 EPDCVYFLKTGTCKYGSTCKYNHPR 125
                789********************96 PP
3zf-CCCH31.53e-10146170327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C ++ rtG Ck+G  CkF+H++
  Lsa014741 146 EKACAHYIRTGSCKFGVACKFHHPQ 170
                568********************97 PP
4zf-CCCH34.24.2e-11270296127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++Cr+f+ tG CkyG+ Ck++H++
  Lsa014741 270 PGEPECRYFMHTGNCKYGSDCKYHHPK 296
                5799*********************96 PP
5zf-CCCH32.51.5e-10317341226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++++ +G+Ck+G++Ck+ H+
  Lsa014741 317 GQAVCSYYSLYGICKFGPTCKYDHP 341
                7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4185482IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-45481IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75680IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-55981IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79398126IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5104125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6142172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0065145170IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4147169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286269297IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6269296IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8271296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6274298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5275297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385315343IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7315342IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-8317341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPDNRRVQRN GGVANSSSNS SVHNIEEAVR RLRIQTDGKE DGTAMAGSMP YPDRPGEPDC  60
IFYLRTGLCG YGNICRFNHP THIGQVNQLQ HGGELPERVG EPDCVYFLKT GTCKYGSTCK  120
YNHPRDRRGA GPVMLNMVGL PMRQEEKACA HYIRTGSCKF GVACKFHHPQ PSMDGSNIQL  180
PYSSQQPQPL MNGVSTWPLP RATYVSDPLL QTPQTYLPIV LPHSQGIGPT QGWSTYMGSL  240
SSVSSGSIYG GPGSIEQPYS SASSNLPERP GEPECRYFMH TGNCKYGSDC KYHHPKEKIA  300
QLAASSLGPL GLPLRPGQAV CSYYSLYGIC KFGPTCKYDH PLMGYSYNYS MSLPNPPILD  360
PSLFPYGGVN SSTLHSSGSS PSKSSKNEGA KTPAGPSPSP SPSPSPSPQR VASPSHSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756422.10.0zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A2J6LUF90.0A0A2J6LUF9_LACSA; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-160(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-102C3H family protein