PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014721

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 720aa MW: 83441 Da PI: 4.8644

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695669	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.5e-22	109	192	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 k+Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Lsa014721 109 KYYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEAS-----TRRKETRTGCMAMIRLRLIESNRWRVDEVKLEHNHLF 192 69**************************************98877.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	109	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-26	311	397	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.334	597	633	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.2E-5	608	631	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-7	608	635	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MENNSDKSEE LIEDDGGDLD IDSNQVFGIG NNDVETESLF GIEGDDMEND NELVLDIETN 60 EHENGNEQIL EFERNDLENG NHDQENVPEH NSIPPIVGME FESYEDAYKY YNCYAKELGF 120 GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT LKEASTRRKE TRTGCMAMIR LRLIESNRWR 180 VDEVKLEHNH LFDPERAQNS KSHKRAESVK RKSEPIAEVE VRTIKLYRTP TMDTVCYGSS 240 NERDFDNEFG KAKRLNLNKG DTKIIQDYFC RVQLINPNFF YIMDFSDDGF LKNVFWIDSR 300 ARASYNYFGD VIALDTTCLK NKYNVPLVVF VGSNHHGQTI PLGFALLADE SQQTYTWLLR 360 TWLTCMAGRP PQTIITDQST TLQTVITEIF PRAHHRLFLP LVIESILENF GNLELFQTVL 420 SNIIYNSIKV DEFELAWEDM IDRFAVRDND MLRKLFDDRE RWVPVYLKDT FLAGMLTFQP 480 VESTESTVPF FHGYVHQETS LKEFFEMHDL VIQNKIQKEA FDDRESTQST PKLKTICRYE 540 SQLAKIYTKE LFSRFQFEVE MMSNCFSVAQ VNTNGSIVTY MITEQESGAE GNTVRNMEVM 600 YDKIGVEVRC ICSCFNFKGY LCRHALLVLN HNGIEEIPGQ YVLSRWRKDF KRVYVPDLGS 660 DSVDTGNLVQ WFVQLHKRAL QVVEEGMTSQ EHYMAAWQSF KESLNKVRLV ADKNGQSGQS

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MENNSDKSEE LIEDDGGDLD IDSNQVFGIG NNDVETESLF GIEGDDMEND NELVLDIETN  60
EHENGNEQIL EFERNDLENG NHDQENVPEH NSIPPIVGME FESYEDAYKY YNCYAKELGF  120
GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT LKEASTRRKE TRTGCMAMIR LRLIESNRWR  180
VDEVKLEHNH LFDPERAQNS KSHKRAESVK RKSEPIAEVE VRTIKLYRTP TMDTVCYGSS  240
NERDFDNEFG KAKRLNLNKG DTKIIQDYFC RVQLINPNFF YIMDFSDDGF LKNVFWIDSR  300
ARASYNYFGD VIALDTTCLK NKYNVPLVVF VGSNHHGQTI PLGFALLADE SQQTYTWLLR  360
TWLTCMAGRP PQTIITDQST TLQTVITEIF PRAHHRLFLP LVIESILENF GNLELFQTVL  420
SNIIYNSIKV DEFELAWEDM IDRFAVRDND MLRKLFDDRE RWVPVYLKDT FLAGMLTFQP  480
VESTESTVPF FHGYVHQETS LKEFFEMHDL VIQNKIQKEA FDDRESTQST PKLKTICRYE  540
SQLAKIYTKE LFSRFQFEVE MMSNCFSVAQ VNTNGSIVTY MITEQESGAE GNTVRNMEVM  600
YDKIGVEVRC ICSCFNFKGY LCRHALLVLN HNGIEEIPGQ YVLSRWRKDF KRVYVPDLGS  660
DSVDTGNLVQ WFVQLHKRAL QVVEEGMTSQ EHYMAAWQSF KESLNKVRLV ADKNGQSGQS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761325.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Refseq	XP_023761331.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A251VDH3	0.0	A0A251VDH3_HELAN; Putative FAR1-related sequence 8
STRING	EMJ18225	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]