PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa014523 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | Whirly | ||||||||||||
Protein Properties | Length: 252aa MW: 28016 Da PI: 9.5045 | ||||||||||||
Description | Whirly family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 217.1 | 1.6e-67 | 77 | 215 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 s+yk+kaal+v+++ p+f ldsg++kl+++G++ll++a+++++r+ydW++kq+f+ls+te++++++l++k+sceffhdp++++s+eG+vrk+lkvePlp Lsa014523 77 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFVLLQFAPSAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPFKGKSDEGRVRKVLKVEPLP 176 7*************************************************************************************************** PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 dGsG+f+nlsv+n+l++ +es+++Pv+kaefa+l s+++ Lsa014523 177 DGSGHFFNLSVQNKLINMDESIYIPVTKAEFAILVSAFN 215 **********************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.8E-77 | 67 | 237 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.14E-77 | 70 | 252 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.5E-61 | 78 | 212 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLNLSLSSTQ SGYIIQNPKS PFILNPLLSS PPTIKFINPS SRKLSLKCQY SDQQQRPDAS 60 SYSQPREDAP KVFIGHSIYK GKAALTVEPR PPEFAPLDSG AFKLTKEGFV LLQFAPSAGV 120 RQYDWSRKQV FSLSVTEIGS IISLGAKDSC EFFHDPFKGK SDEGRVRKVL KVEPLPDGSG 180 HFFNLSVQNK LINMDESIYI PVTKAEFAIL VSAFNFVVPY LLGWHTFVNS IKPQDSTRLS 240 NGNPRSGADL EW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-119 | 70 | 252 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-119 | 70 | 252 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-119 | 70 | 252 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-119 | 70 | 252 | 36 | 218 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023742985.1 | 0.0 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9LL85 | 1e-121 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A2J6JVE6 | 0.0 | A0A2J6JVE6_LACSA; Uncharacterized protein | ||||
STRING | XP_009599234.1 | 1e-124 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-116 | ssDNA-binding transcriptional regulator |