PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa014383 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 219aa MW: 23649.5 Da PI: 6.5069 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 29 | 78 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +gr+vAeIrdp + ++r++lg+f++ae+Aa+a++aa++ l+g+ Lsa014383 29 FRGVRKRP-WGRFVAEIRDPLK---KARVWLGTFDSAEDAARAYDAAARTLRGA 78 8*******.**********743...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-35 | 28 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-13 | 28 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.13 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.90E-19 | 28 | 85 | No hit | No description |
PRINTS | PR00367 | 4.0E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-32 | 29 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 29 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.0E-10 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MRGGKGGAAA SKAALPVTVG SGSGTEIRFR GVRKRPWGRF VAEIRDPLKK ARVWLGTFDS 60 AEDAARAYDA AARTLRGAKA KTNFPLTIAS TAQHQQNLND RHPFFDSPEH EIIVPQRPTC 120 SGMSSTVESF SGPRPLTTAD VVLPRVHHPQ KQPAATDSCC DYCDSSSSVV VDEEDAGDIA 180 SSSFQKTMLP FDLNMPPPVD DVPFDSPIGD DLHCTELRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 29 | 90 | 6 | 68 | ATERF1 |
3gcc_A | 5e-22 | 29 | 90 | 6 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023744639.1 | 1e-161 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 4e-45 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A2J6JRU2 | 1e-160 | A0A2J6JRU2_LACSA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037359 | 5e-64 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
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