PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014130
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-X1
Protein Properties Length: 908aa    MW: 98877.1 Da    PI: 8.1751
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694640PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-27209PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.3e-06645664120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG+H C++lCH G CppCp+
  Lsa014130 645 CGQHDCESLCHSGHCPPCPE 664
                ******************96 PP
2zf-NF-X116.12.5e-05755770116
   zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                CG+H C ++CH+ pC+
  Lsa014130 755 CGMHACLRTCHPSPCD 770
                ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.24E-8249318No hitNo description
PROSITE profilePS500168.671256317IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.362259315IPR001841Zinc finger, RING-type
PROSITE patternPS013590259314IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.60E-5348409No hitNo description
SMARTSM004380.03371389IPR000967Zinc finger, NF-X1-type
PfamPF014220.98373388IPR000967Zinc finger, NF-X1-type
CDDcd060089.41E-9416463No hitNo description
PfamPF014220.034420443IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017426445IPR000967Zinc finger, NF-X1-type
CDDcd060085.50E-7480523No hitNo description
SMARTSM004380.0042490509IPR000967Zinc finger, NF-X1-type
PfamPF014220.0027490507IPR000967Zinc finger, NF-X1-type
CDDcd060081.20E-11538584No hitNo description
SMARTSM004380.0011548567IPR000967Zinc finger, NF-X1-type
PfamPF014220.011548565IPR000967Zinc finger, NF-X1-type
SMARTSM00438120606641IPR000967Zinc finger, NF-X1-type
PfamPF014227.4606617IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-7635678No hitNo description
SMARTSM004380.003645664IPR000967Zinc finger, NF-X1-type
PfamPF014223.2E-4645663IPR000967Zinc finger, NF-X1-type
SMARTSM004380.034702720IPR000967Zinc finger, NF-X1-type
PfamPF014229.4708719IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13755789IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-4755770IPR000967Zinc finger, NF-X1-type
PfamPF01422120791813IPR000967Zinc finger, NF-X1-type
SMARTSM004380.058798819IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
IRLKEKLVCV VTTHNTSGQS IHDSIETFVS LAPQALIDDL FVGLPYNSAR RSNSYLIGRL  60
NRFPFSPPKL SFPSPIPVII SSFQSGKSVC EVSFDXIRFG ILAIDLHLFI CIADSISTIS  120
FSNPPPTSNQ VDMSSHVRSD RRDNRPRFPR RQEWIPRGST ATVTTTAVDA NSSSTVAPIP  180
DANGGEPNIR SGPPPQNAHN RGNVGVQRRQ QQHMPRVNQT RDRRKDAPRE ERGSKGTTGA  240
LPQLVQEIQD KLLKGTIECM ICYDMVRRSA PVWSCSSCFS IFHLHCIKKW ARAPTSIDLS  300
AEKNQGFNWR CPGCQSVQLT SSKDIRYVCF CGKRQEPPSD PYLTPHSCGE PCGRPLEKEV  360
VGSGVSRDDL CPHRCVLQCH PGPCPPCKAF APPRPCPCGK KTITTRCSDQ KSVLTCGQRC  420
GKPRKCLRHR CENTCHVGPC DSCEVPIEAS CFCKKNTEVV VCGGMSVKGE VNVQDGIFSC  480
SSTCGKPLGC GNHLCKETCH PGVCGDCDLL PGKVTSCYCG KSSLQEERKT CLDPIPTCSQ  540
TCDKTLPCGL HQCKETCHPE SCPPCQVMVT QKCRCGSTSR TVECFKTSME VDTFTCDKPC  600
GRKKNCGRHR CSEKCCPLSN SHNLHRFEDW DLHMCSKPCE KKLRCGQHDC ESLCHSGHCP  660
PCPETIFTDL TCACGRSSIP PPLPCGTPPP SCQYPCSVPQ PCGHVSSHSC HFGDCPPCSV  720
PIPKECIGGH VVLRNIPCGS KDIRCNKICG KTRQCGMHAC LRTCHPSPCD SSGGSTSTST  780
SGVKASCGQT CGAPRRDCRH TCTALCHPFN QCPDVRCEFP VTISCSCNRI TATVPCDAGG  840
SNSGYNADTV LEASTIQKLP APLQPVESNG KKIPLGQGKV VCDDECSKME RKKVSRMLLV  900
SHSNLDAL
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755123.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2J6LXL10.0A0A2J6LXL1_LACSA; Uncharacterized protein
STRINGXP_008240286.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1