PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014098

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 680aa MW: 74950.4 Da PI: 6.6265

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-56169	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	267.1	5.7e-82	321	679	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayft..eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae + sg+++ aq +Larl+++ ++p+ +p+qR+a+ f +++++ ++ +++ ++++ + + ++ a+klfsevsPi++f ++t Lsa014098 321 DQLFTAAELILSGNFTHAQGILARLNHQfsSAPAPhKPLQRAAFLFQgsNGISNLKFK-----SQQNHVKPFN---GVFKMGAYKLFSEVSPIIQFINFT 412 79************************754444469*****722455555555.....4444555555...99****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 Nq+Ilea+ +++ Dfdi+ G+QW++++q+L s++ +gp sl+iT+++sp++++ el ++e+L++fA+e+g++fe +v+ +++++++++ Lsa014098 413 SNQTILEALGDAKKFTSYDFDIGFGAQWASFIQELPSKNnnggGGPCSLKITAFASPSTHHPIELGLMHENLSHFAHEIGISFELEVV---NFDSFDPRS 509 **********************************988866688************************************8...9**** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgr 292 ++v+ +Ea+aVn+ + +++ l s+++++L++ k+lsP++v ++ +++++ +F + +l+ l+yy +l+ds+ a+ se +k+Er+l+++ Lsa014098 510 FSVSGNEAIAVNFPIWSASTH-----L-SAIPSILHFAKQLSPRIVDSLDRGCERTDLPFPHYLLQGLQYYEVLLDSIdGAN--VVSEISNKIERFLFQP 601 **********9777776.....3.33678*****************************************5555..58999******* PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+++v + + e + +Wr+ +++ G++pv ls++a++qa++++++++ +g+++e++++slvl+W++r+L+++SaW+ Lsa014098 602 QIESMVLGKLQI----PEPMPQWRSLFTAGGYSPVLLSNFAETQADCVVKRMQIQGFHIEKKQASLVLCWQNRELMTASAWK 679 **998876....***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.037	293	659	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-79	321	679	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MMRGMPFEVA AFQALTGSNN KFKEGSFGSN NSNEPISVLD TRRSPSPSTS TSTLSSSFGG 60 GGNGCTTTTA PSLGVPDPDI NNHHHLQQKW PDSVPQEMCM SGSLANISGE GGRKDEWSEL 120 QPIPAEFELQ QRRFGVGLED WESLLSESAA SPAQDQSLRW ISGDFDDTSL SLQQLLQSNQ 180 IDQNAPPATT VSETPAPPNF HPQNPLFFPF SNPDQNPPPH LTPPPQIQFH HHQGLVKAPV 240 FHQGLQKSPV FHQNVQKTPA SDLGLQKPSV NQGFQKVAIS NPGHELQLKK PLMVPGTKQG 300 PPAHQQHHHP QQQQQNQLIC DQLFTAAELI LSGNFTHAQG ILARLNHQFS SAPAPHKPLQ 360 RAAFLFQGSN GISNLKFKSQ QNHVKPFNGV FKMGAYKLFS EVSPIIQFIN FTSNQTILEA 420 LGDAKKFTSY DFDIGFGAQW ASFIQELPSK NNNGGGGPCS LKITAFASPS THHPIELGLM 480 HENLSHFAHE IGISFELEVV NFDSFDPRSF SVSGNEAIAV NFPIWSASTH LSAIPSILHF 540 AKQLSPRIVD SLDRGCERTD LPFPHYLLQG LQYYEVLLDS IDGANVVSEI SNKIERFLFQ 600 PQIESMVLGK LQIPEPMPQW RSLFTAGGYS PVLLSNFAET QADCVVKRMQ IQGFHIEKKQ 660 ASLVLCWQNR ELMTASAWKC

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MMRGMPFEVA AFQALTGSNN KFKEGSFGSN NSNEPISVLD TRRSPSPSTS TSTLSSSFGG  60
GGNGCTTTTA PSLGVPDPDI NNHHHLQQKW PDSVPQEMCM SGSLANISGE GGRKDEWSEL  120
QPIPAEFELQ QRRFGVGLED WESLLSESAA SPAQDQSLRW ISGDFDDTSL SLQQLLQSNQ  180
IDQNAPPATT VSETPAPPNF HPQNPLFFPF SNPDQNPPPH LTPPPQIQFH HHQGLVKAPV  240
FHQGLQKSPV FHQNVQKTPA SDLGLQKPSV NQGFQKVAIS NPGHELQLKK PLMVPGTKQG  300
PPAHQQHHHP QQQQQNQLIC DQLFTAAELI LSGNFTHAQG ILARLNHQFS SAPAPHKPLQ  360
RAAFLFQGSN GISNLKFKSQ QNHVKPFNGV FKMGAYKLFS EVSPIIQFIN FTSNQTILEA  420
LGDAKKFTSY DFDIGFGAQW ASFIQELPSK NNNGGGGPCS LKITAFASPS THHPIELGLM  480
HENLSHFAHE IGISFELEVV NFDSFDPRSF SVSGNEAIAV NFPIWSASTH LSAIPSILHF  540
AKQLSPRIVD SLDRGCERTD LPFPHYLLQG LQYYEVLLDS IDGANVVSEI SNKIERFLFQ  600
PQIESMVLGK LQIPEPMPQW RSLFTAGGYS PVLLSNFAET QADCVVKRMQ IQGFHIEKKQ  660
ASLVLCWQNR ELMTASAWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-26	396	679	80	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738890.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2J6K474	0.0	A0A2J6K474_LACSA; Uncharacterized protein
STRING	Lus10004353	1e-154	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-102	GRAS family protein