PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013995

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 359aa MW: 40457.9 Da PI: 5.6764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58683450	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-25247	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39	1.8e-12	76	118	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeNkaLkkele 50 +k++rr+++NReAAr+sR+RKka++++Le + k L e ele Lsa013995 76 DKVQRRLAQNREAARKSRLRKKAYVQQLEAsRLKLLHLEQ-----ELE 118 89**************************962455554444.....344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.0E-10	72	128	No hit	No description
SMART	SM00338	8.2E-8	73	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.795	75	119	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-9	76	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-7	77	121	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.2E-25	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNSSSTQFLN SKRMDVYEPM HQFSMWGDFK GNIYQDASAA MIIEMDAKLD NQSEDASHTT 60 IGASHHFDQE ASKPGDKVQR RLAQNREAAR KSRLRKKAYV QQLEASRLKL LHLEQELEQT 120 KAQAALLSGG VNANRLGIPG TTNSGIAAFE MEYEQWVEEQ NKKTNALKTG LNAPLPETEL 180 DILVKDTLNH YANLFNIKAA AAKTDVCYLI SGMWKTSTER LFLWIGGFRP SELLKVLVPQ 240 LELLDQQSHD LSNLIQACQQ AEDSLSQGME KLQQTLAEAV ACARDLGGDC YEMSNPMEKL 300 EELVRLVIQA DFVRHETLQQ TLRYLTTRQA AQGLISLGEY FQRLRDLSSA WAMRLCEPA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNSSSTQFLN SKRMDVYEPM HQFSMWGDFK GNIYQDASAA MIIEMDAKLD NQSEDASHTT  60
IGASHHFDQE ASKPGDKVQR RLAQNREAAR KSRLRKKAYV QQLEASRLKL LHLEQELEQT  120
KAQAALLSGG VNANRLGIPG TTNSGIAAFE MEYEQWVEEQ NKKTNALKTG LNAPLPETEL  180
DILVKDTLNH YANLFNIKAA AAKTDVCYLI SGMWKTSTER LFLWIGGFRP SELLKVLVPQ  240
LELLDQQSHD LSNLIQACQQ AEDSLSQGME KLQQTLAEAV ACARDLGGDC YEMSNPMEKL  300
EELVRLVIQA DFVRHETLQQ TLRYLTTRQA AQGLISLGEY FQRLRDLSSA WAMRLCEPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735035.1	0.0	transcription factor TGA1-like isoform X1
Refseq	XP_023735036.1	0.0	transcription factor TGA1-like isoform X1
Swissprot	Q39237	1e-143	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2J6KCT3	0.0	A0A2J6KCT3_LACSA; Uncharacterized protein
STRING	evm.model.supercontig_100.3	1e-155	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-120	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]