PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013975
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 216aa    MW: 23521.2 Da    PI: 6.2794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674523PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1861111155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+Wv+eIr p++   + r++lg+f  +e+Aa+a++ a+++++g
  Lsa013975  61 PVYRGVRRRA-WGKWVSEIRQPKK---KSRIWLGTFPDPEMAARAHDVAALSIKG 111
                68*****777.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1261111IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2162119IPR016177DNA-binding domain
PROSITE profilePS5103223.44662119IPR001471AP2/ERF domain
SMARTSM003803.7E-3462125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3162120IPR001471AP2/ERF domain
PRINTSPR003671.4E-96374IPR001471AP2/ERF domain
CDDcd000188.94E-3263121No hitNo description
PRINTSPR003671.4E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAEALNSETE STTTTISDPF SKELSLEDPN RKWIKRSREN AEDDDGNSSS SKATKNNSKH  60
PVYRGVRRRA WGKWVSEIRQ PKKKSRIWLG TFPDPEMAAR AHDVAALSIK GKSAILNFPE  120
LSDILPRPIS CSPCDVQAAA TKAASMVHLN QITTAMTPST SASSTCSAAS TLTSYSGKPP  180
SEELSEIVEL PSLGEGFNSN DFVFVDSGWD YFSSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1957120973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756753.11e-156ethylene-responsive transcription factor TINY-like
SwissprotQ9M0809e-55ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A2J6LTS51e-155A0A2J6LTS5_LACSA; Uncharacterized protein
STRINGXP_009620060.13e-57(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]