PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013915
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 290aa    MW: 32530.3 Da    PI: 4.6172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688464PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-18104152153
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                s+ykGVr++k +g+W+AeIrd +     + +r +lg++ taeeA  a+   r+++
  Lsa013915 104 SKYKGVRRRK-WGKWAAEIRDpF-----KgRRLWLGTYNTAEEASMAYSIKRLEF 152
                89*****998.**********55.....45******************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-17104152IPR016177DNA-binding domain
CDDcd000184.22E-24104145No hitNo description
PfamPF008472.7E-11104151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-21105150IPR001471AP2/ERF domain
PROSITE profilePS5103220.152105166IPR001471AP2/ERF domain
SMARTSM003803.0E-17105159IPR001471AP2/ERF domain
PRINTSPR003672.2E-9106117IPR001471AP2/ERF domain
PRINTSPR003672.2E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVGFWKNKAK FQESNKPMRT IRVICHDPDL TDSSDDDNPN KKPYGSKKIV REIKIPLIGD  60
GNICTESSCQ GSNNGENNTG KKKKGLSKTL SKPSSPPTPA ASVSKYKGVR RRKWGKWAAE  120
IRDPFKGRRL WLGTYNTAEE ASMAYSIKRL EFDKIAESLK INSNNPDHAL VSQPEKNTVF  180
EDSGSSISAV CCNIKQTDGD GDEMKKIETT NFPEIDQEFD LGLELDAAFL DKILPPGNQF  240
GDLDDFELIG FDGDEASNLP DWDFEEFDQE ELAWMNTLKI DEPLLNEFCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112KGVRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756070.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A2J6LVI40.0A0A2J6LVI4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-21ERF family protein