PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013731

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 375aa MW: 41100 Da PI: 8.5995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685731	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	324	371	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lsa013731 324 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 371 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-14	318	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-9	318	375	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-14	320	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	324	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-7	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDRDFFLNAG LHFEPQTQMP SWKLMASAPE MNCPPAQSSL GRFNNFESAF SSMVSSPVSN 60 SVAPNDTFAV RELIGKLGSI CNGDGEVSPA AMAPAAAAPL NSPPRKFDWP AVDHFGKENQ 120 LNLRDSIPLG SGFPSLTADP GFAERAAKFS SFGSRSFNGR TSQSGLNSSN PDLQFRSSVS 180 PLMRNARMPR VYSSPSLKMD GSAMAIRENK NMAETHMANG LGCEYKSNSN EESSVSEQMQ 240 IGLRNPDDSN SRKRKAASSK GKAKEIASSV VKEEGSDDSN LKRQKKTEED TNVETEKNPK 300 LPEPPKDYKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML 360 DEIINYVQSL QGQVE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDRDFFLNAG LHFEPQTQMP SWKLMASAPE MNCPPAQSSL GRFNNFESAF SSMVSSPVSN  60
SVAPNDTFAV RELIGKLGSI CNGDGEVSPA AMAPAAAAPL NSPPRKFDWP AVDHFGKENQ  120
LNLRDSIPLG SGFPSLTADP GFAERAAKFS SFGSRSFNGR TSQSGLNSSN PDLQFRSSVS  180
PLMRNARMPR VYSSPSLKMD GSAMAIRENK NMAETHMANG LGCEYKSNSN EESSVSEQMQ  240
IGLRNPDDSN SRKRKAASSK GKAKEIASSV VKEEGSDDSN LKRQKKTEED TNVETEKNPK  300
LPEPPKDYKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML  360
DEIINYVQSL QGQVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737611.1	0.0	transcription factor bHLH62-like isoform X2
TrEMBL	A0A2J6K738	0.0	A0A2J6K738_LACSA; Uncharacterized protein
STRING	XP_004292343.1	1e-100	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-42	bHLH family protein