PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013696
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 194aa    MW: 21398.1 Da    PI: 8.6618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29959101PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-21940PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-171463255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               ++ GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Lsa013696 14 KFGGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFETAEAAARAYDQAAILMNG 63
               899***999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-211373No hitNo description
Gene3DG3DSA:3.30.730.107.2E-311472IPR001471AP2/ERF domain
SMARTSM003801.1E-361477IPR001471AP2/ERF domain
PROSITE profilePS5103220.9431471IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-191472IPR016177DNA-binding domain
PfamPF008474.1E-101463IPR001471AP2/ERF domain
PRINTSPR003675.0E-91526IPR001471AP2/ERF domain
PRINTSPR003675.0E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
XRGILIFMAQ SSKKFGGVRQ RQWGSWVSEI RHPLLKRRIW LGTFETAEAA ARAYDQAAIL  60
MNGQSAKTNF PATNKNLSGN VHHSSSSCQT EIPAATLAAK LRKCCKDPSP SLTCLRLDSD  120
NSHIGVWQKR PGKGSGSGWV MKVELGGKRK DQGMVEETIS PMVAVVEDDG ASGDHDIDEE  180
NRVVMQMIEE LLNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1514711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763420.11e-137ethylene-responsive transcription factor WIN1-like
SwissprotQ3E9581e-67SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A2J6LEL41e-135A0A2J6LEL4_LACSA; Uncharacterized protein
STRINGXP_008466408.13e-75(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.24e-60ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]