PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa013574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | WRKY | ||||||||
Protein Properties | Length: 509aa MW: 56197.6 Da PI: 6.4182 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.1e-30 | 264 | 322 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r a+d++++++tYeg+Hnh+ Lsa013574 264 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRWADDQTILVTTYEGTHNHP 322 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-32 | 248 | 324 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 256 | 324 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 258 | 324 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 263 | 323 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 265 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MGNFTLDTSE PLVLFNKTSR WNPFSMVPGG AAADVVAEGQ DNRRNVLSEM DLFSTRNHSH 60 NRVVVKKENF LGNDLDLNTG LNLVTMVSNR SKMGDDISTT GEDQTIDKLK DIQNELERMN 120 IENQRLREMC LQVSNNYNAL QTHFVTLMHQ QEQEMRNENI QNLDQNANDH LSHDQVSVAV 180 PRQFMELRQS THDHLISRDS SSEEKTIDRD TKTIAREDTP DSDVWTSNKV PKLVVPENIE 240 HTNDPTMRKV RVSVRARSEA PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MAVGCPVRKQ 300 VQRWADDQTI LVTTYEGTHN HPLPPAAVAM ASTTSAAATM LLSGSTSSVD GFMNSNLLAQ 360 AIRPPNIATI SASAPFPTIT LDLTHPPNST PIFEGYNNPA ASQFAMPLQA FHQGGSGAMV 420 YNQSRFSGLH LSNNELSNQV LQYQQTAPPQ HHQSQPHASF GHSLSAATAA ITADPNFTAA 480 LAAAITSIMG GNGSTISPKN EENNNREMG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-22 | 254 | 324 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 8e-22 | 251 | 326 | 2 | 76 | WRKY transcription factor 1 |
2lex_A | 7e-22 | 254 | 324 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023742869.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-105 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2J6JVI5 | 0.0 | A0A2J6JVI5_LACSA; Uncharacterized protein | ||||
STRING | VIT_10s0116g01200.t01 | 1e-142 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 4e-96 | WRKY family protein |