PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013567
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 270aa    MW: 30616.8 Da    PI: 6.4399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679598PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-17130175147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
        Lsa013567 130 RGHWRPAEDAKLKELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 175
                      899*****************************.***********996 PP
2Myb_DNA-binding521.6e-16182225146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W++ ar ++ gRt++ +k++w+ 
        Lsa013567 182 RRAFSEEEEERLMTAHRLYGNK-WALMARLFP-GRTDNAVKNHWHV 225
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.902125176IPR017930Myb domain
SMARTSM007172.3E-14129178IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-27130223IPR009057Homeodomain-like
PfamPF002492.1E-16130175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-26131183IPR009057Homeodomain-like
CDDcd001676.51E-13133174No hitNo description
PROSITE profilePS5129424.656177231IPR017930Myb domain
SMARTSM007171.6E-13181229IPR001005SANT/Myb domain
PfamPF002496.2E-14182224IPR001005SANT/Myb domain
CDDcd001673.85E-10184224No hitNo description
Gene3DG3DSA:1.10.10.603.3E-20184230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGMIFADCFG SLSINNDNPS KINDHFIYSS LTTSSSSSSL SSSSLELPFM LPTTTTTTIN  60
NHNPSRNFHE DEDQGHDDFE EEEEGGREED DDEEEHIGLN ISGSYSFNGS FDSHQNGRVR  120
SGGQSKTSAR GHWRPAEDAK LKELVALHGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI  180
NRRAFSEEEE ERLMTAHRLY GNKWALMARL FPGRTDNAVK NHWHVIMARK YREQSNAYRR  240
RKMMMITQTQ TQTQVALPPP PPAVSATTAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-311292306107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732263.10.0transcription factor MYB105-like
TrEMBLA0A2J6MCS41e-164A0A2J6MCS4_LACSA; Uncharacterized protein
STRINGGLYMA01G05980.23e-81(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-76myb domain protein 105