PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013537
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 304aa    MW: 33329.5 Da    PI: 6.1684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682612PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-7148PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20140190255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Lsa013537 140 HYRGVRQRP-WGKFAAEIRDP---NkKGTRVWLGTFDTAVEAAKAYDRAAFKLRG 190
                7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-33139199IPR001471AP2/ERF domain
PfamPF008472.1E-14140190IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-23140200IPR016177DNA-binding domain
PROSITE profilePS5103224.263140198IPR001471AP2/ERF domain
SMARTSM003801.4E-39140204IPR001471AP2/ERF domain
CDDcd000182.17E-33140198No hitNo description
PRINTSPR003671.0E-10141152IPR001471AP2/ERF domain
PRINTSPR003671.0E-10164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASPDQSSAL DLIRHHLLID DLSFLQTYSG LTDNDSHSVQ TSDFLFPQIS SSNSSSCSSS  60
SPVFEPFSNS VSDEQFEFNV MREPAVCKNP WKQTGGGGSV SGNSFKERKP SLNISIPFPP  120
PVIKKTVVAE KVEGVEERRH YRGVRQRPWG KFAAEIRDPN KKGTRVWLGT FDTAVEAAKA  180
YDRAAFKLRG SKAILNFPLE IGNLNEAAEM PVVKSNGRKR VAREAEVEER ESRKEVKKEM  240
ETEMVMAESS GVKTTDAAIG PLTPSCWTTV WDFGDGDGNG KGIFEVPPLS PYPGVGFSSG  300
CMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-31139201163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743957.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A2J6JTC50.0A0A2J6JTC5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-46ERF family protein