PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013490
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 393aa    MW: 43996.3 Da    PI: 8.5874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684305PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-47359PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31199257259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+rs +d++++++tYeg+Hnh+
  Lsa013490 199 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVvGCPVRKQVQRSMDDQTILITTYEGTHNHP 257
                7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33183259IPR003657WRKY domain
SuperFamilySSF1182904.45E-28190259IPR003657WRKY domain
PROSITE profilePS5081129.826193259IPR003657WRKY domain
SMARTSM007742.0E-36198258IPR003657WRKY domain
PfamPF031066.0E-27200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEARCENMVL NSFDGHKFPI NRHENRSAII NEVDFFSRSS TTGNSSQLHP SSIHHAIENK  60
EHDRVNQELQ LNLNVGSNLN TINTKNQDAH KLAILQNELE KMKRENESLR SMLAQIKEKY  120
SFLQRHIKTI NKVEDDTLEF KKLTPPLMKI DPNVDSSDMN KDVKLNSPKD ICDQGATAET  180
TMRRARVSVR VRSEASMISD GCQWRKYGQK MAKGNPCPRA YYRCTMVVGC PVRKQVQRSM  240
DDQTILITTY EGTHNHPLPQ TAMAMASTTS AAASMLLSGS VSSSNHHNHN LIVGSMLSSY  300
HPNITTTLSA TTPFPSITLD LTNPSSNHLQ QPPFHFPFST NTNPNFSLPN KPSLLAQLDA  360
QQYSVRKFSG IPNSDQELMD AATAAVTTNP HFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22189259877Probable WRKY transcription factor 4
2lex_A5e-22189259877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737053.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 47
SwissprotQ9XEC32e-67WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2J6K8F00.0A0A2J6K8F0_LACSA; Uncharacterized protein
STRINGGorai.007G171900.15e-80(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-46WRKY family protein