PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013407

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 671aa MW: 74919.8 Da PI: 6.3282

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692164	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-43131	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	343.3	4.2e-105	308	670	2	374
GRAS 2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshlt 97 +++L+++A+ ++sg++ laq +Larl+++ sp g+p++R+a+yf+eAL+ ++ + + ++p++t++ + + ++ a+k fse+sP+++f+++t Lsa013407 308 IDQLFKAADLIQSGNNPiLAQGILARLNHQLSPVGKPFERAAFYFKEALQLLTHS----ILNNINPQTTPTASpfsLIFKIGAYKSFSEISPFIQFANFT 403 689********888769***************************99999....555555555554445559******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..r 195 +Nqa+le+++g +++HiiDfdi++G+QW++L+q+La R++g sl+iT+++sp+s+++ el t+e+L +fA+e++v f+f+++ ++ + + ++L + Lsa013407 404 CNQALLESLNGFDQIHIIDFDIGYGGQWASLMQELALRNNGVSSLKITAFASPSSHDQLELGLTRENLIHFASEINVGFDFEIV-NIDVLASSSWSLpfH 502 *******************************************************************************6.445555667777558 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 v+ +Ea+aVnl + h + +++++++s vL++vk+lsPk+vv v++ +d+++ sF +++++al+ ys l++sl+a+ +++ +k+Er+l++++i+ Lsa013407 503 VSDNEAIAVNLPI--HVFSNHQTQIPS----VLRFVKNLSPKIVVSVDRGCDRTDLSFSNHLIHALQSYSNLLESLDAG-NMTHDLLQKIERFLIQPAIE 595 888*****9..666655666666....*****************************************888.689999********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++v + e+ ++Wr+ + +aGF+p+ +s+++++qa++l++++++++++ve+++ lvl+W++r+Lvs+SaWr Lsa013407 596 KIVLGRFLF----PEKTQHWRNLFLSAGFSPLMFSNFTESQAECLVKRTPVREFHVEKRQSLLVLCWQRRELVSASAWR 670 987666....9**********************************9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.368	281	650	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-102	308	670	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MPLPFEFEGK GVVWLENQQE DAQFLVPYAN PLVHFQNLVN KKRKYYINEP RSVLDNITTS 60 PSPPASTSTL SSSHGGAETA GVAALSSKWP PPENQETSTS NVGGVLDLHH FQQLPLEEKC 120 GGMEDWENGD SGQDQAMLRW IMGDVEDPSM GLNKMLHGNP GGDFEFNGGF GVVDQGFIGL 180 DSGNPVVSQI GNLSSNPQLP PSPTPAMFNN NHHHHQNQIF SPLNETQMLP FDVKPNLFNP 240 QLPFEHLMPP QPKRHNPGSI EYNPSMHKNP FLDSGPTPNP LQLLQKSSSM KKMVAINHHQ 300 QQHQQGIIDQ LFKAADLIQS GNNPILAQGI LARLNHQLSP VGKPFERAAF YFKEALQLLT 360 HSILNNINPQ TTPTASPFSL IFKIGAYKSF SEISPFIQFA NFTCNQALLE SLNGFDQIHI 420 IDFDIGYGGQ WASLMQELAL RNNGVSSLKI TAFASPSSHD QLELGLTREN LIHFASEINV 480 GFDFEIVNID VLASSSWSLP FHVSDNEAIA VNLPIHVFSN HQTQIPSVLR FVKNLSPKIV 540 VSVDRGCDRT DLSFSNHLIH ALQSYSNLLE SLDAGNMTHD LLQKIERFLI QPAIEKIVLG 600 RFLFPEKTQH WRNLFLSAGF SPLMFSNFTE SQAECLVKRT PVREFHVEKR QSLLVLCWQR 660 RELVSASAWR C

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MPLPFEFEGK GVVWLENQQE DAQFLVPYAN PLVHFQNLVN KKRKYYINEP RSVLDNITTS  60
PSPPASTSTL SSSHGGAETA GVAALSSKWP PPENQETSTS NVGGVLDLHH FQQLPLEEKC  120
GGMEDWENGD SGQDQAMLRW IMGDVEDPSM GLNKMLHGNP GGDFEFNGGF GVVDQGFIGL  180
DSGNPVVSQI GNLSSNPQLP PSPTPAMFNN NHHHHQNQIF SPLNETQMLP FDVKPNLFNP  240
QLPFEHLMPP QPKRHNPGSI EYNPSMHKNP FLDSGPTPNP LQLLQKSSSM KKMVAINHHQ  300
QQHQQGIIDQ LFKAADLIQS GNNPILAQGI LARLNHQLSP VGKPFERAAF YFKEALQLLT  360
HSILNNINPQ TTPTASPFSL IFKIGAYKSF SEISPFIQFA NFTCNQALLE SLNGFDQIHI  420
IDFDIGYGGQ WASLMQELAL RNNGVSSLKI TAFASPSSHD QLELGLTREN LIHFASEINV  480
GFDFEIVNID VLASSSWSLP FHVSDNEAIA VNLPIHVFSN HQTQIPSVLR FVKNLSPKIV  540
VSVDRGCDRT DLSFSNHLIH ALQSYSNLLE SLDAGNMTHD LLQKIERFLI QPAIEKIVLG  600
RFLFPEKTQH WRNLFLSAGF SPLMFSNFTE SQAECLVKRT PVREFHVEKR QSLLVLCWQR  660
RELVSASAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-38	320	670	15	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733548.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-157	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2J6KG20	0.0	A0A2J6KG20_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-148	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]