PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013334
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 296aa    MW: 32056.4 Da    PI: 4.6218
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29964737PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-29641PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39941951101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++p ++r++a+ ++ yeA+ar++dPvyG+v+++l+lqqq++ l++ela++++
  Lsa013334  94 PCGACKFLRRKCVNGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLTHIPVNRRQHAVVTISYEAQARLSDPVYGCVSTVLALQQQVAALQTELAMVQN 193
                7***********************9989**********************************************************************99 PP

     DUF260 100 el 101
                +l
  Lsa013334 194 QL 195
                86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.34893195IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3894192IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
AWINVHELMP GDEERIIEIS DTRRRDPDGR MPSVSPAQEA LLLIHERILE SDGGGYSLGY  60
GGGDDDEXAG KRTAAAAAPF EAATSEPGSI PNPPCGACKF LRRKCVNGCI FAPYFGSDQG  120
AARFAAVHKV FGASNVSKLL THIPVNRRQH AVVTISYEAQ ARLSDPVYGC VSTVLALQQQ  180
VAALQTELAM VQNQLINNRL IVANAIQNSQ QQLEPMHHLS LLQPAYSNAS SASNNILNMN  240
SFDSSLNNLG DDHQSGTLSQ SFNPLQLCQP CHDEEDDDEE ESGDPLAFAN QILQSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-36821971113LOB family transfactor Ramosa2.1
5ly0_B4e-36821971113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766371.11e-166LOB domain-containing protein 20
SwissprotQ9SRV33e-69LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2J6L8961e-165A0A2J6L896_LACSA; Uncharacterized protein
STRINGcassava4.1_028764m1e-86(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-54LOB domain-containing protein 20