PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013232

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 469aa MW: 54609.8 Da PI: 6.9702

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687423	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80	3.4e-25	109	196	1	86
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+e+r++++ +++ ++ k+plW+e+s+ m ++ g++rs +Ckek+enl k+ykk+keg+ ++ + +++++f+qle Lsa013232 109 RWPRQETLALLEIRSRLDPCFKEatsSNHKAPLWDEISRIMnEDYGYQRSGRKCKEKFENLYKYYKKTKEGKVGK--HDGKHYRFFRQLE 196 8*******************8444589********7778************************96..56667****98 PP
2	trihelix	40.9	5.2e-13	360	438	2	78
trihelix 2 WtkqevlaLiearremeerlrrgklk..kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 W + e+ Li++r+e+e r+++ +++ ++lW+ev+ ++ g++rs +Cke we++ ++ k+k ++ ++e+ss+ Lsa013232 360 WIETEICSLIRIRTEKECRFQDVNQEhgEGLWQEVAFELSLLGYSRSDSECKEIWEKICVDFNKTKMVCESMKKEDSSR 438 9******************866554499**********************************9999987777754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.18E-17	108	177	No hit	No description
Pfam	PF13837	5.4E-18	109	198	No hit	No description
PROSITE profile	PS50090	6.725	109	170	IPR017877	Myb-like domain
Pfam	PF13837	5.4E-10	358	430	No hit	No description
PROSITE profile	PS50090	6.168	374	418	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
XFIQPYLKIY SITTYYMDHG RYGQPAFTTG HTRVHFNSRI PSLDSEVPFY MSQVLNPDAP 60 PPHTFRDNPT VTPPPPPPAY SPQTGWNGFN SGINLNHGTT SYAQSTTIRW PRQETLALLE 120 IRSRLDPCFK EATSSNHKAP LWDEISRIMN EDYGYQRSGR KCKEKFENLY KYYKKTKEGK 180 VGKHDGKHYR FFRQLESLFG DQHDHRSINN NILIHPSSQS NNSSEHGTPS SEKNRSNRKL 240 KEKEMIAVIE ESMESQFSKL MAKQDEFGKK ILCTIERKEH EREVSNEEWR KQEVARLDHE 300 CEAWASHVAR IETRDECLLN ALQNLLRVRS IGSSYRSMVP TENSKEINGC LGNYEKHKDW 360 IETEICSLIR IRTEKECRFQ DVNQEHGEGL WQEVAFELSL LGYSRSDSEC KEIWEKICVD 420 FNKTKMVCES MKKEDSSRTS NSMDDKEDRN SCFSATAMNI DGERSWETM

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

XFIQPYLKIY SITTYYMDHG RYGQPAFTTG HTRVHFNSRI PSLDSEVPFY MSQVLNPDAP  60
PPHTFRDNPT VTPPPPPPAY SPQTGWNGFN SGINLNHGTT SYAQSTTIRW PRQETLALLE  120
IRSRLDPCFK EATSSNHKAP LWDEISRIMN EDYGYQRSGR KCKEKFENLY KYYKKTKEGK  180
VGKHDGKHYR FFRQLESLFG DQHDHRSINN NILIHPSSQS NNSSEHGTPS SEKNRSNRKL  240
KEKEMIAVIE ESMESQFSKL MAKQDEFGKK ILCTIERKEH EREVSNEEWR KQEVARLDHE  300
CEAWASHVAR IETRDECLLN ALQNLLRVRS IGSSYRSMVP TENSKEINGC LGNYEKHKDW  360
IETEICSLIR IRTEKECRFQ DVNQEHGEGL WQEVAFELSL LGYSRSDSEC KEIWEKICVD  420
FNKTKMVCES MKKEDSSRTS NSMDDKEDRN SCFSATAMNI DGERSWETM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023754615.1	0.0	trihelix transcription factor PTL-like
TrEMBL	A0A2J6LZ26	0.0	A0A2J6LZ26_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-70	Trihelix family protein