PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa013116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28090 Da PI: 9.1805 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1e-27 | 22 | 72 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s rqvtfskRr+g+lKKA+EL +LCdaev viifsstgklye++s Lsa013116 22 KKIENVSSRQVTFSKRRAGLLKKAKELAILCDAEVGVIIFSSTGKLYEFAS 72 68***********************************************86 PP | |||||||
2 | K-box | 67.4 | 4.9e-23 | 95 | 181 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ + e++ Lk+ei +L++ qR ++G++Le L++keL++Le+qL++++ ++++K+ l+e+ie+++ +e+++ +en+aL+k++ Lsa013116 95 ETQQEVDPEVEALKAEILKLRKGQRLMMGKELEGLTYKELEHLEHQLHDGMLAVKNRKDMALMEEIEQTKLREQRTMQENEALKKQI 181 45789999****************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.805 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-39 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-30 | 15 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.27E-41 | 15 | 87 | No hit | No description |
PRINTS | PR00404 | 2.6E-28 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 16 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-28 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-28 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-17 | 96 | 181 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.385 | 97 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
XGDCGGEERR RKTMGRGRIE LKKIENVSSR QVTFSKRRAG LLKKAKELAI LCDAEVGVII 60 FSSTGKLYEF ASSRLQNIIS RYEKNSDCLD KPVPETQQEV DPEVEALKAE ILKLRKGQRL 120 MMGKELEGLT YKELEHLEHQ LHDGMLAVKN RKDMALMEEI EQTKLREQRT MQENEALKKQ 180 ILDHLTKSTT NSEIQLLGRN NHFNTPSSLG CLKRDNGDIG ISLHLGLSPH NDQHHKRKVP 240 KIELDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-19 | 14 | 82 | 1 | 69 | MEF2C |
5f28_B | 9e-19 | 14 | 82 | 1 | 69 | MEF2C |
5f28_C | 9e-19 | 14 | 82 | 1 | 69 | MEF2C |
5f28_D | 9e-19 | 14 | 82 | 1 | 69 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023731673.1 | 1e-180 | MADS-box transcription factor 23-like | ||||
TrEMBL | A0A2J6KKJ4 | 1e-169 | A0A2J6KKJ4_LACSA; Uncharacterized protein | ||||
STRING | VIT_08s0007g08790.t01 | 5e-65 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-49 | AGAMOUS-like 15 |