PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa013041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24766.4 Da PI: 10.1002 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA ELS+LCdaeva+++fs++gk y +ss Lsa013041 9 KRIENPTNRQVTFSKRRDGLLKKAIELSILCDAEVALLVFSPSGKAYHFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 74.7 | 2.6e-25 | 84 | 172 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ e +++e++ +kk ie L+++++hl GedL+sL +keL+qLe+qL ++ ++RskK +ll e+i+ l++ k lqee++ L+kkl e Lsa013041 84 RTIEVWKNEMDEMKKTIEILETKHKHLAGEDLSSLGIKELKQLERQLRIGVDRVRSKKWRLLSEHISLLKRNHKTLQEEHTILQKKLHE 172 56789*********************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.693 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.01E-41 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.613 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-22 | 86 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKVELKR IENPTNRQVT FSKRRDGLLK KAIELSILCD AEVALLVFSP SGKAYHFSSH 60 DMDMTIRRYR NEKGLHKMNN HGVRTIEVWK NEMDEMKKTI EILETKHKHL AGEDLSSLGI 120 KELKQLERQL RIGVDRVRSK KWRLLSEHIS LLKRNHKTLQ EEHTILQKKL HELLNEADEY 180 SGLDSSDHAI QRFIPDGQSH SPLNMNQLGF SNN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 6e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023747202.1 | 1e-156 | truncated transcription factor CAULIFLOWER D-like | ||||
TrEMBL | A0A2J6JLD4 | 1e-155 | A0A2J6JLD4_LACSA; Uncharacterized protein | ||||
STRING | Migut.D01274.1.p | 6e-84 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-46 | AGAMOUS-like 16 |