PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013014

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 480aa MW: 54176 Da PI: 6.2995

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691766	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	430.6	1.2e-131	111	479	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL++cA a++s++ + ++l+++ + +s +gdp+qRl ay++e+L ar s++++y+al+++e + +e l+++++++e++P+lkf++++aN a Lsa013014 111 NNLLIACASALASNNPDEFEKLVEQARAFVSISGDPIQRLGAYIVEGLVARKECSGNNIYRALRCKEPE---GKELLSYMHILYEICPYLKFGYMAANGA 207 689***************************************************************9...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I eav +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s + ++le +g+rL+++ +++++p+ef++ + ++ e+L+v+pg Lsa013014 208 IAEAVRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSRyaRGDSLELVGKRLESVSQKFKIPIEFHP-IQVFAPFVTKEMLDVRPG 306 *********************************************999999**********************.5777888999**** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 EalaVn++lqlh++ desv+l+++rde L++vksl+Pkvv++veqe+++n++ F+ rfle l+yy+a+f+s++++lp + ++rikvE+++l+r+ivn++a Lsa013014 307 EALAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAMFESMDVTLPIDRKKRIKVEQHCLARDIVNIIA 406 ************************************************************************************************ PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ceg+er+erhe ++kWr+r+++aGF++ +ls ++++ ++ ll++++++ y++ e++g+++lgWk+r+L+s+SaW Lsa013014 407 CEGKERVERHELFMKWRSRFMMAGFTQCSLSPYVNSVIRNLLKRYSEN-YTLVEKDGAMLLGWKERNLISASAW 479 ******************************************55.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.757	84	461	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-129	111	479	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MDSEQIFSYR TTGQTSSYPQ TPQIPTKLIN SLKFESRNSP KSPFLTPFDS ETFTALSDNS 60 PSSVEDCTSF NHSGTAYMKN ALHDIETTLM APDDDVTMPM TCMGQPGSNL NNLLIACASA 120 LASNNPDEFE KLVEQARAFV SISGDPIQRL GAYIVEGLVA RKECSGNNIY RALRCKEPEG 180 KELLSYMHIL YEICPYLKFG YMAANGAIAE AVRTEDRIHI IDFQIAQGTQ WMTLLQALAA 240 RPGGPPHVRI TGIDDPVSRY ARGDSLELVG KRLESVSQKF KIPIEFHPIQ VFAPFVTKEM 300 LDVRPGEALA VNFALQLHHM ADESVDLSNP RDERLRMVKS LNPKVVTLVE QESNTNTAAF 360 FPRFLEVLDY YTAMFESMDV TLPIDRKKRI KVEQHCLARD IVNIIACEGK ERVERHELFM 420 KWRSRFMMAG FTQCSLSPYV NSVIRNLLKR YSENYTLVEK DGAMLLGWKE RNLISASAWH

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MDSEQIFSYR TTGQTSSYPQ TPQIPTKLIN SLKFESRNSP KSPFLTPFDS ETFTALSDNS  60
PSSVEDCTSF NHSGTAYMKN ALHDIETTLM APDDDVTMPM TCMGQPGSNL NNLLIACASA  120
LASNNPDEFE KLVEQARAFV SISGDPIQRL GAYIVEGLVA RKECSGNNIY RALRCKEPEG  180
KELLSYMHIL YEICPYLKFG YMAANGAIAE AVRTEDRIHI IDFQIAQGTQ WMTLLQALAA  240
RPGGPPHVRI TGIDDPVSRY ARGDSLELVG KRLESVSQKF KIPIEFHPIQ VFAPFVTKEM  300
LDVRPGEALA VNFALQLHHM ADESVDLSNP RDERLRMVKS LNPKVVTLVE QESNTNTAAF  360
FPRFLEVLDY YTAMFESMDV TLPIDRKKRI KVEQHCLARD IVNIIACEGK ERVERHELFM  420
KWRSRFMMAG FTQCSLSPYV NSVIRNLLKR YSENYTLVEK DGAMLLGWKE RNLISASAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-66	117	479	26	378	Protein SCARECROW
5b3h_A	6e-66	117	479	25	377	Protein SCARECROW
5b3h_D	6e-66	117	479	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023752644.1	0.0	chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2J6M2U9	0.0	A0A2J6M2U9_LACSA; Uncharacterized protein
STRING	GLYMA12G34420.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-180	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]