PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa012872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28700.8 Da PI: 9.4818 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.6e-15 | 71 | 124 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ +e Lr++lP + + ++kK+s i+ +Av+YI +Lq Lsa012872 71 KKLNHNASERDRRKKVNNLYESLRSVLPMS-NDRKKKVSIPGIVSRAVKYIPELQ 124 6789*************************5.478888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.22E-15 | 61 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.227 | 70 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-14 | 71 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-12 | 71 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.34E-12 | 71 | 128 | No hit | No description |
SMART | SM00353 | 4.2E-11 | 76 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLALSSPLFS TPYGWPLADN FSKVCGDPDS TQSFLEFPSS DQIQLDFTPE NSSSFGGAVN 60 RGKGDGMNVV KKLNHNASER DRRKKVNNLY ESLRSVLPMS NDRKKKVSIP GIVSRAVKYI 120 PELQKEVETL LHKKEKLWSY SSSTENIYIK KQSAKDAIID EKSSIVSSVS VLSEKEAVIQ 180 LISSTKSSVK NKDIVFLSKV LEKLEEEEDG FILLNATTFK CVGEGMLLNT IHFQVQGNNK 240 IDAQKMKEKL RSFQQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023730605.1 | 0.0 | transcription factor bHLH100-like isoform X2 | ||||
TrEMBL | A0A2J6KMM6 | 0.0 | A0A2J6KMM6_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 8e-32 | bHLH family protein |