PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa012776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25574.3 Da PI: 5.4098 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 127 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr+ AeIrdp+++g +r++lg+++ta e aka+++a+ +++g Lsa012776 127 HYRGVRRRP-WGRYSAEIRDPCQRG--RRIWLGTYDTAIEGAKAYDRAAFNMRG 177 69*******.***********8876..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.30E-29 | 127 | 185 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-21 | 127 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-32 | 127 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-13 | 127 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 127 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 127 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-13 | 128 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-13 | 167 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
METPVEFSTL DLLRQHLLDE FEIPAPPPVD ALSNIELDDH FISDFDYLNW STTNASCDSS 60 TSWSSSSSVS NNLNSNEIIN NTPDDVCHFS VFDSINFSVF EFKPDVMETT VNPSMKMKKT 120 ERKDEGHYRG VRRRPWGRYS AEIRDPCQRG RRIWLGTYDT AIEGAKAYDR AAFNMRGRKA 180 ILNFPLEIEK NQREQDDAAD AVVNRNSRRK RSRHSVEVKT ET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 127 | 192 | 5 | 70 | ATERF1 |
3gcc_A | 2e-26 | 127 | 192 | 5 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 134 | KKTERKDEGHYRGVRRRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023750051.1 | 1e-166 | ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A2J6M8E1 | 1e-165 | A0A2J6M8E1_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 5e-33 | ethylene response factor 104 |