PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012624
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 335aa    MW: 37819.2 Da    PI: 8.0715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687763PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-21525PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11157203455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++++k Lq
  Lsa012624 157 DHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKHLKTLQ 203
                5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-9157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.34E-12158207No hitNo description
SMARTSM003535.6E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEISHFRNLS ELTGMEDASF NFQCPVNSFD NQLDSMGISG TFGGDNMDRI HGQLGVFDIY  60
KPVMEPSSRP CKQLKTSSWN SSITTDHSHS LMTLNLSQQA TLLTPKEEMT VSSKSRHGFI  120
RDTHLHFSNQ ESSGFNKSHH GGFDVAKNSS KHTPAQDHIL AERKRREKLS QRFIALSALV  180
PGLKKMDKAS VLGDAIKHLK TLQEKVKTLE EQIKKRPNTE SVVFVKRYEM LADVNESSSS  240
NENSGGPIHD QLPEIEARFF GNDVLIRIHC EKKSGVLEKT LIEIEKLHLS VINSTCMTFA  300
NYALDITVIA QMDKEFTMTM KDLMKNLRLA LKQFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13157222874Transcription factor MYC2
5gnj_B5e-13157222874Transcription factor MYC2
5gnj_E5e-13157222874Transcription factor MYC2
5gnj_F5e-13157222874Transcription factor MYC2
5gnj_G5e-13157222874Transcription factor MYC2
5gnj_I5e-13157222874Transcription factor MYC2
5gnj_M5e-13157222874Transcription factor MYC2
5gnj_N5e-13157222874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733192.10.0transcription factor bHLH18-like isoform X1
SwissprotQ9T0724e-59BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2J6KGW20.0A0A2J6KGW2_LACSA; Uncharacterized protein
STRINGXP_009779237.11e-101(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-59bHLH family protein