PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012515
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 284aa    MW: 32346.6 Da    PI: 9.9598
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32105242PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.2e-1177108334
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                ++k +rr+++NReAAr+sR+RKka++++Le  
  Lsa012515  77 SDKLQRRLAQNREAARKSRLRKKAYVQQLESG 108
                689**************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-675145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-876124No hitNo description
PROSITE profilePS502178.9977121IPR004827Basic-leucine zipper domain
PfamPF001704.3E-878114IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-779114No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141441.5E-24168236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MASTSTQFVT SRRMGIYDPL QRISMWDDGF GANLNPNTSP GMMMMTQVDS RLANKTEYNS  60
QESLEPSPEA RATKTISDKL QRRLAQNREA ARKSRLRKKA YVQQLESGRL KLVQLEQELE  120
RARRQGAYGG LLNTGNSLLS GNVMNAGIAT FEMEYELWIG EQRKKDDDLR KVLLTHTSDV  180
ELRMFVDTGL NHYYDLFRMK ADAAKADVFY LLNGLWRTPV ERFFQWIGGF RPSELLYVSF  240
RLPLSISIKX NNILGFALVA DTDTTNRAKR YATGEGEGSP AIMR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770891.11e-176transcription factor TGA1-like
RefseqXP_023770892.11e-176transcription factor TGA1-like
RefseqXP_023770893.11e-176transcription factor TGA1-like
RefseqXP_023770894.11e-176transcription factor TGA1-like
RefseqXP_023770895.11e-176transcription factor TGA1-like
SwissprotQ392378e-82TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2J6KYA81e-174A0A2J6KYA8_LACSA; Uncharacterized protein
STRINGVIT_18s0001g04470.t014e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.52e-82bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]