PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012402

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 9268.63 Da PI: 10.7238

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58650405	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93	1.4e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk++ey+s Lsa012402 9 KRIENSSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMHEYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.557	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-29	2	62	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRGKTEIKR IENSSNRQVT YSKRKNGIIK KAKEITVLCD ANVSLVIYGS SGKMHEYCSP 60 KTEICRVKLI ESRKRTRTCK X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-17	1	71	1	71	MEF2 CHIMERA
6byy_B	2e-17	1	71	1	71	MEF2 CHIMERA
6byy_C	2e-17	1	71	1	71	MEF2 CHIMERA
6byy_D	2e-17	1	71	1	71	MEF2 CHIMERA
6bz1_A	2e-17	1	71	1	71	MEF2 CHIMERA
6bz1_B	2e-17	1	71	1	71	MEF2 CHIMERA
6bz1_C	2e-17	1	71	1	71	MEF2 CHIMERA
6bz1_D	2e-17	1	71	1	71	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.
UniProt	Transcription factor involved in the genetic control of flower development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024972162.1	2e-35	floral homeotic protein PMADS 2 isoform X1
Refseq	XP_024972164.1	2e-35	floral homeotic protein PMADS 2 isoform X2
Swissprot	Q07474	3e-34	MADS2_PETHY; Floral homeotic protein PMADS 2
Swissprot	Q0HA25	3e-34	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A118JYI3	7e-35	A0A118JYI3_CYNCS; Transcription factor, K-box
TrEMBL	A0A2P5RCX0	3e-34	A0A2P5RCX0_GOSBA; Uncharacterized protein
STRING	cassava4.1_026045m	3e-33	(Manihot esculenta)
STRING	XP_009803901.1	3e-33	(Nicotiana sylvestris)
STRING	XP_009608638.1	3e-33	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	5e-29	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]