PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012275
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 472aa    MW: 52349.4 Da    PI: 5.3885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689583PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-153178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk+ G g+W+++ r  g+ R++k+c++rw ++l
        Lsa012275 31 KGPWTAAEDAILMEYVKKNGEGNWNAVQRNSGLMRCGKSCRLRWANHL 78
                     79******************************************9986 PP
2Myb_DNA-binding49.78.5e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ ++++++ ++G++ W++ a +++ gRt++++k++w++
        Lsa012275  84 KGAFTPEEERQIIELHSKFGNK-WARMALHLQ-GRTDNEIKNYWNT 127
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.932678IPR017930Myb domain
SuperFamilySSF466898.61E-2930125IPR009057Homeodomain-like
SMARTSM007173.6E-123080IPR001005SANT/Myb domain
PfamPF002491.2E-133178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-233285IPR009057Homeodomain-like
CDDcd001674.94E-103378No hitNo description
PROSITE profilePS5129426.29779133IPR017930Myb domain
SMARTSM007172.7E-1683131IPR001005SANT/Myb domain
PfamPF002494.5E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2586133IPR009057Homeodomain-like
CDDcd001675.03E-1286129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAPEDGATSA GRNTASGGGC ARANSGQVLK KGPWTAAEDA ILMEYVKKNG EGNWNAVQRN  60
SGLMRCGKSC RLRWANHLRP NLKKGAFTPE EERQIIELHS KFGNKWARMA LHLQGRTDNE  120
IKNYWNTRLK RRLRAGLPIY PVDFQQQHHH HRRHPEQPLQ NQTLPFSSSS SSSNHANAAL  180
NSISPMLFSP INYPVLNTPL YYPNSQSHYK LLRDNNGGVS LSLPSHSNPQ FNNSSASSMS  240
FFNQGLPSSD HGMSPIPTRL FENIENELPS IQSSYQAITP TCSSNTVNDH MIVSSNDGDN  300
AISPYISPQG NSGLLEDVLG ESRALLSSQM LSNESKSPDK GKEKITHDYS LMEEPENVIL  360
ESVFEPRDDN KTILDESSSG HSSIDIVVKS RSNAFDEINT MDDDFSSWID FPTGSLQDWY  420
GGSEDASTEK PNDVLNGTTG TDNQVEIPCS PVGTETDHDH DHDNDCDHEH DW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27291335108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RLKRRLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770474.10.0transcription factor MYB97
TrEMBLA0A2J6KZ120.0A0A2J6KZ12_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-66myb domain protein 101