PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012166
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 329aa    MW: 36765.5 Da    PI: 9.0317
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-15392PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38.2e-14215274361
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklks 61 
                + +r+rr++kNRe+A rsR+RK a+++eLe  + +Le+eN+aL + ++e+ +k +++l +
  Lsa012166 215 AQQRQRRMIKNRESAARSRERKMAYQAELEALAVTLEEENEALlRAKAEQTRKRYKQLMD 274
                679**************************************9638899999999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-11213277IPR004827Basic-leucine zipper domain
PfamPF001702.5E-12215274IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.887215257IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-8217271No hitNo description
CDDcd147079.06E-16217267No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-12218274No hitNo description
PROSITE patternPS000360220235IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASSKLMMKM SSSTSRNSDL IRRKSSNSSS SSTSATHLNH NHKRRGIRTD KNSGVLQMTV  60
DGVSPIVHDN NEQQTPETTL FDTLLDAAGA VSATNDSETT GNVSRQEIVR TSSNGPQKTV  120
DDVWKEIVAS CKQEVPDELM TLEDFLAKAA AVEEEDVKII PQPLTSERLS GGIFSFENPM  180
HPLNVDGVVG FGIGADEMGN RGKRRAIVEP LDKAAQQRQR RMIKNRESAA RSRERKMAYQ  240
AELEALAVTL EEENEALLRA KAEQTRKRYK QLMDNIIPXY RDRDKKKDKI CAEKSSIIGV  300
VIEGRHKLKF YLIDMEKLGI MVQMQLLAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770827.10.0G-box-binding factor 4-like
TrEMBLA0A2J6KYA20.0A0A2J6KYA2_LACSA; Uncharacterized protein
STRINGVIT_18s0072g00470.t016e-72(Vitis vinifera)
STRINGSolyc04g071510.2.12e-71(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-30G-box binding factor 4