PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012007
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 341aa    MW: 37440 Da    PI: 6.2457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683970PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-48188PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-184994147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
        Lsa012007 49 RGPWSPEEDVILSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 94
                     89******************************.***********985 PP
2Myb_DNA-binding52.31.3e-16101145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+ Ed ++ da++ +G++ W++Ia+ +  gRt++ +k++w++ 
        Lsa012007 101 RKPFTEAEDRIIMDAHAIHGNK-WASIAKLLR-GRTDNAIKNHWNST 145
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.1174499IPR017930Myb domain
SuperFamilySSF466891.47E-3046142IPR009057Homeodomain-like
SMARTSM007179.8E-164897IPR001005SANT/Myb domain
PfamPF002491.4E-174994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2550102IPR009057Homeodomain-like
CDDcd001674.03E-155193No hitNo description
SMARTSM007171.4E-14100148IPR001005SANT/Myb domain
PfamPF002491.6E-14101145IPR001005SANT/Myb domain
PROSITE profilePS5129420.297101150IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-22103149IPR009057Homeodomain-like
CDDcd001671.18E-11103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDDAGHSEE HTIAPAASNA PEVGEVGDVV MVEEGSGGGG RADKRSKVRG PWSPEEDVIL  60
SELVSKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVE RKPFTEAEDR IIMDAHAIHG  120
NKWASIAKLL RGRTDNAIKN HWNSTLRRRY IHPNSYNNIN NTKMDINCNL LDTTKASSED  180
TLSNGNINQI QVKYEHQNQQ FPETTLSRPI PHFGAFSVYT PQNGIPIPNE ESRTKVIPIQ  240
GPLNLIQASK PESIGCKFLK GYTAESVIPS RCGHGCCSGG DSQERSLLGS EFVEYEELPP  300
LSSQELATIA TDLNTIAWIK IGLEKPTQTT FALPAQVEGL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39481496107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757203.10.0transcription factor MYB1-like
SwissprotQ425755e-84MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2J6LSH70.0A0A2J6LSH7_LACSA; Uncharacterized protein
STRINGVIT_08s0007g01540.t011e-105(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-91myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]