PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011801

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 680aa MW: 75739.9 Da PI: 6.6623

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694065	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2.1e-06	101	127	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 + lC+ a+tG C+y d+C+F+H+ Lsa011801 101 RNLCPMVAKTGkadSCPYNDKCRFSHD 127 56899999******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.967	98	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	103	129	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.709	142	167	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	7.6E-73	324	567	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	9.34E-91	328	563	No hit	No description
SuperFamily	SSF51395	1.37E-65	328	641	No hit	No description
Pfam	PF01207	5.3E-52	331	598	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	412	430	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MEETEAELIV GEPPKIPTEP PQLPRKSVLE MSADELVAKS IVPVKKEYIC PVPIRLGSDN 60 NGPSGDAVPA STTASARPVS KEKKSKRQLK RERNQEKQST RNLCPMVAKT GKADSCPYND 120 KCRFSHDIEA FKDQKPADLE GNCPFEGDEG PCPYGLGCRF LGTHTTTEVA SGIPKGNKYS 180 EINGLKKDVQ RLLWKNKMKF PKADAELKVL GLMGPTKSKK TPSTNNEEEN QTVSNDSHVT 240 NENGCGEMNE CSLEATEKAE GNNSGDDPRP QKRGKPLNDQ TSEVNGETNG SSYEVKDVDI 300 NPTTTEIETD KTLKLHPREK KLIDFKDKLY LAPLTTVGNL PFRRVCKALG ADITCGEMAM 360 CTNLLQGQAA EWALLRRHVS EDIFGVQICG AYPDTVARAC ELIEQECTVD FIDINMGCPI 420 DLVVNKGAGS ALLSKPMRMK NVIQAASSTV DIPITIKART SYYEGRSRID SVIANIAEWG 480 ASAVTIHGRS RQQRYTKQPD WEYVYQCTKK APQSLQVLGN GDIFSFSDWK THKSDCPQLS 540 SCMIARGALV KPWLFTEIKE QRDWDISSGE RLDIFKDYVR FGLQHWGSDT KGVETTRHFL 600 LEWLSYTYRY VPFGLLEVIP QKLNWRPPAY FGRDDLETLM ASESAADWIK ISEMLLGKVP 660 DGFVFSPKHK SNAFDKAENG

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MEETEAELIV GEPPKIPTEP PQLPRKSVLE MSADELVAKS IVPVKKEYIC PVPIRLGSDN  60
NGPSGDAVPA STTASARPVS KEKKSKRQLK RERNQEKQST RNLCPMVAKT GKADSCPYND  120
KCRFSHDIEA FKDQKPADLE GNCPFEGDEG PCPYGLGCRF LGTHTTTEVA SGIPKGNKYS  180
EINGLKKDVQ RLLWKNKMKF PKADAELKVL GLMGPTKSKK TPSTNNEEEN QTVSNDSHVT  240
NENGCGEMNE CSLEATEKAE GNNSGDDPRP QKRGKPLNDQ TSEVNGETNG SSYEVKDVDI  300
NPTTTEIETD KTLKLHPREK KLIDFKDKLY LAPLTTVGNL PFRRVCKALG ADITCGEMAM  360
CTNLLQGQAA EWALLRRHVS EDIFGVQICG AYPDTVARAC ELIEQECTVD FIDINMGCPI  420
DLVVNKGAGS ALLSKPMRMK NVIQAASSTV DIPITIKART SYYEGRSRID SVIANIAEWG  480
ASAVTIHGRS RQQRYTKQPD WEYVYQCTKK APQSLQVLGN GDIFSFSDWK THKSDCPQLS  540
SCMIARGALV KPWLFTEIKE QRDWDISSGE RLDIFKDYVR FGLQHWGSDT KGVETTRHFL  600
LEWLSYTYRY VPFGLLEVIP QKLNWRPPAY FGRDDLETLM ASESAADWIK ISEMLLGKVP  660
DGFVFSPKHK SNAFDKAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	7e-28	325	563	27	261	tRNA-dihydrouridine synthase B
6ei9_B	7e-28	325	563	27	261	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755255.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2J6LX73	0.0	A0A2J6LX73_LACSA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_006487270.1	0.0	(Citrus sinensis)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]