PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa011778 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 253aa MW: 29551.1 Da PI: 8.2866 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 17 | 67 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss Lsa011778 17 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFSS 67 79***********************************************96 PP | |||||||
2 | K-box | 68.9 | 1.6e-23 | 93 | 184 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e+ +++s++qe+ +Lk++++ L++ R++ Ge+++sL+ +eL++Le+qL+ slk+iR+ +++ ll+++ e+qk+e++l e nk+Lr +lee Lsa011778 93 KEDLQEQSSYQEYMRLKERYDALKQLERNYYGEEIDSLTTNELESLERQLNCSLKQIRTIRTQSLLDKLYEQQKMEHQLYESNKTLRLRLEE 184 678899*********************************************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-39 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.898 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.25E-42 | 10 | 82 | No hit | No description |
SuperFamily | SSF55455 | 5.1E-32 | 10 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-32 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-32 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-32 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-18 | 94 | 182 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.523 | 98 | 188 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
XGGEERRTMG KGRLELKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIVFSTRG 60 KLYEFSSTSS MLKTLERYEK CSFGPPEQRK PAKEDLQEQS SYQEYMRLKE RYDALKQLER 120 NYYGEEIDSL TTNELESLER QLNCSLKQIR TIRTQSLLDK LYEQQKMEHQ LYESNKTLRL 180 RLEEESQAEA LQWDALANGM IYGHHQHQMS QPTRDAFYHA TGCKTTLQIG YQTEQMSGVT 240 STNVNHQVQG WPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-29 | 83 | 184 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-29 | 83 | 184 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-29 | 83 | 184 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-29 | 83 | 184 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023771536.1 | 0.0 | agamous-like MADS-box protein AGL9 homolog isoform X2 | ||||
Swissprot | Q8LLR0 | 6e-97 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A2J6KWQ1 | 1e-178 | A0A2J6KWQ1_LACSA; Uncharacterized protein | ||||
STRING | XP_004140534.1 | 1e-96 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 2e-92 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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