PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa011677 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||||||
Protein Properties | Length: 246aa MW: 28674 Da PI: 9.1953 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 223.2 | 1.3e-68 | 1 | 244 | 132 | 374 |
GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 L+ Rp+gpp l+iTg++ p++g e++ etg+rLakf+++++vpfef+ +ak+++++++e+L+++++ ++Vn+v +l ++lde+v +s+rd+vL+ Lsa011677 1 LSMRPGGPPVLQITGIDLPQPGfrPGERVAETGRRLAKFCKRFNVPFEFHG-IAKKWDEIRIEDLKIDRNVLTVVNSVNRLRNILDETVVESSPRDAVLR 99 789******************9*9***************************.7*********************************************** PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 l+++++P+++v+ + hn++ +l+rf eal ++s+lfd+++++ r s +r +E+e+ gre++nvvaceg+ r+er et+++W++r +aGF++v l Lsa011677 100 LIREINPDMFVLGILNGTHNAPFLLNRFREALFHFSTLFDMFDQTSDRVSVDRLCYEQEVYGREVMNVVACEGTTRVERPETYKQWQSRNVRAGFRQVGL 199 *********************************************9****************************************************** PP GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++++k+ +r + + + v+e+ +++++gWk+r L+++S W+ Lsa011677 200 FREKVEEVKSKVRLEYHKDFLVDEDGKWMLQGWKGRVLYACSLWK 244 ****************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.5E-66 | 1 | 244 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 38.385 | 1 | 224 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
LSMRPGGPPV LQITGIDLPQ PGFRPGERVA ETGRRLAKFC KRFNVPFEFH GIAKKWDEIR 60 IEDLKIDRNV LTVVNSVNRL RNILDETVVE SSPRDAVLRL IREINPDMFV LGILNGTHNA 120 PFLLNRFREA LFHFSTLFDM FDQTSDRVSV DRLCYEQEVY GREVMNVVAC EGTTRVERPE 180 TYKQWQSRNV RAGFRQVGLF REKVEEVKSK VRLEYHKDFL VDEDGKWMLQ GWKGRVLYAC 240 SLWKPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-21 | 1 | 245 | 150 | 380 | Protein SCARECROW |
5b3h_A | 1e-21 | 1 | 245 | 149 | 379 | Protein SCARECROW |
5b3h_D | 1e-21 | 1 | 245 | 149 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023753844.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-104 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2J6M0E3 | 1e-180 | A0A2J6M0E3_LACSA; Uncharacterized protein | ||||
STRING | VIT_06s0004g04980.t01 | 1e-118 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-107 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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