PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011591

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 262aa MW: 30007.3 Da PI: 6.9383

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58675701	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	239.9	1.1e-73	2	257	164	374
GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.............................................desv 218 rL + Ae+l++pf+fn+ +++rle+le+e+Lr k+gEala+++vlqlh+ll ++++ Lsa011591 2 RLIEEAEKLDIPFQFNP-IVTRLENLEMEQLRYKSGEALAISSVLQLHTLLafddetikrtqspssnrilinsqtlgdflkkdivnpfspspdstsSSPL 100 9**************.799*******************************************************************99987777 PP GRAS 219 sles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 l+s ++ ++L+++++lsPk++vv+eqe++hn+ ++++r leal +y+alfd+le+++pr+s +r+kvE++l+g+ei+n++aceg er+ rhe+lekW Lsa011591 101 MLNSgKIMSFLNALWNLSPKLMVVTEQESNHNGFTLMDRALEALIFYAALFDCLESTVPRTSVDRQKVEKMLFGEEIKNIIACEGLERKVRHEKLEKWIP 200 777778899*************************************************************************************** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+e aGF+ vpls++ + a +ll++++ dgy++++e+g lv++W+++pL+++SaW+ Lsa011591 201 RFELAGFGRVPLSYNGMLVATRLLQNYGYDGYKIKNENGFLVICWHNQPLFTISAWK 257 ******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.91	1	237	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-71	2	257	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
XRLIEEAEKL DIPFQFNPIV TRLENLEMEQ LRYKSGEALA ISSVLQLHTL LAFDDETIKR 60 TQSPSSNRIL INSQTLGDFL KKDIVNPFSP SPDSTSSSPL MLNSGKIMSF LNALWNLSPK 120 LMVVTEQESN HNGFTLMDRA LEALIFYAAL FDCLESTVPR TSVDRQKVEK MLFGEEIKNI 180 IACEGLERKV RHEKLEKWIP RFELAGFGRV PLSYNGMLVA TRLLQNYGYD GYKIKNENGF 240 LVICWHNQPL FTISAWKFGR YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-21	112	256	233	378	Protein SCARECROW
5b3h_A	2e-21	112	256	232	377	Protein SCARECROW
5b3h_D	2e-21	112	256	232	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023773139.1	0.0	scarecrow-like protein 3
Swissprot	Q9LPR8	1e-106	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A2J6KT68	0.0	A0A2J6KT68_LACSA; Uncharacterized protein
STRING	XP_002513107.1	1e-127	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-105	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]