PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa011551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27821.7 Da PI: 8.4753 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.4 | 5.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+ Lsa011551 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 107.6 | 1.4e-35 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 y++ + + ++++++ s++ e+akLk++ie Lq++qRh++GedL+sLslkeLq+LeqqL+++lk++R +Kn+l+le+i+elqkk kelq++n++L+k+++e Lsa011551 75 YAEMQANTTHNETQGSWSLEHAKLKARIELLQKTQRHFMGEDLDSLSLKELQNLEQQLDTALKHVRLRKNQLMLESISELQKKDKELQDQNNTLSKQIKE 174 56678888899999***********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.95 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.14E-39 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-29 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.858 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD 60 SGMERILERY ERYSYAEMQA NTTHNETQGS WSLEHAKLKA RIELLQKTQR HFMGEDLDSL 120 SLKELQNLEQ QLDTALKHVR LRKNQLMLES ISELQKKDKE LQDQNNTLSK QIKELEKDIP 180 SHQQQNNETM PSFQFNIFNN PNMCEQPRME GDAEENLRQA QMATVTVMPP WMIQHMNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6bz1_A | 4e-19 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_B | 4e-19 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_C | 4e-19 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_D | 4e-19 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6c9l_A | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023764284.1 | 1e-179 | truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Swissprot | Q6E6S7 | 1e-101 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2J6LCT8 | 1e-177 | A0A2J6LCT8_LACSA; Uncharacterized protein | ||||
STRING | XP_009625854.1 | 1e-109 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 8e-92 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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