PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011316

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 390aa MW: 43330.4 Da PI: 9.3713

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32113319	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-41251	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.4	1e-14	108	199	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+++ + +Liea ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k++k +k + + +++ +s +p+f l+ Lsa011316 108 CWSEEATFTLIEAWGDRFVELNRGNLRQKHWQEVADSVnarhgHVKKSRRTDIQCKNRIDTLKKKFKVEKSKMLELgADNYVSPWPFFAPLD 199 7***********************************9766666677899************9987665544899999***9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-23	106	201	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
KERSSQTRLP HQNLPTFVGG TNMSCQSDYN SDPPHAPLLK PRLSPSSPAA SPPTATPHRS 60 SDGNSTTSHQ SETAPTASMD DNETAPPLPL PPPPPPPKNT SFPVREDCWS EEATFTLIEA 120 WGDRFVELNR GNLRQKHWQE VADSVNARHG HVKKSRRTDI QCKNRIDTLK KKFKVEKSKM 180 LELGADNYVS PWPFFAPLDS LIGSSFKPST QTPTPPPPRK RIRTPPSLPA LPPPPSSVPV 240 APRSKRPAPP AFQPSNDTSF FRRNFSVMAA AAAAIDGADE DSDTSWSSGG NGARRSRLEK 300 ADETGSDAYH HLAEAIGRFA EVYERVEEAK QRQMVELEKQ RMQFTKDLEL QRMKLLMESQ 360 VQLEKLKRSK RNSEPDFSRS DEGDHSASIS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

KERSSQTRLP HQNLPTFVGG TNMSCQSDYN SDPPHAPLLK PRLSPSSPAA SPPTATPHRS  60
SDGNSTTSHQ SETAPTASMD DNETAPPLPL PPPPPPPKNT SFPVREDCWS EEATFTLIEA  120
WGDRFVELNR GNLRQKHWQE VADSVNARHG HVKKSRRTDI QCKNRIDTLK KKFKVEKSKM  180
LELGADNYVS PWPFFAPLDS LIGSSFKPST QTPTPPPPRK RIRTPPSLPA LPPPPSSVPV  240
APRSKRPAPP AFQPSNDTSF FRRNFSVMAA AAAAIDGADE DSDTSWSSGG NGARRSRLEK  300
ADETGSDAYH HLAEAIGRFA EVYERVEEAK QRQMVELEKQ RMQFTKDLEL QRMKLLMESQ  360
VQLEKLKRSK RNSEPDFSRS DEGDHSASIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024961112.1	0.0	trihelix transcription factor ASIL2-like isoform X1
TrEMBL	A0A118JSV7	0.0	A0A118JSV7_CYNCS; Uncharacterized protein
STRING	XP_009760894.1	1e-100	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-43	sequence-specific DNA binding transcription factors