PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011221

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 400aa MW: 45393.3 Da PI: 7.0982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-33438	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	214	257	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri++++ +Lr l+P + K++Ka+i+ A++YIk+L+ Lsa011221 214 VTERNRRKRIKDGLYTLRALVPRiS------KMDKASIVGDAIDYIKELE 257 57*******************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.0E-12	9	147	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.80E-12	205	260	No hit	No description
SuperFamily	SSF47459	1.44E-16	206	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-14	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	214	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-10	215	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MRFLFNTLES LRPLTESKAW DYCVVWMFDD DPSGFIKWIG CCCSGSSHGV CKNVKEETDE 60 LELNTPYLCK DTYVKHSVRT KACEKLAVIP SSLPLYPGIH GEVAMSKQPF LLSNDSLGTQ 120 LIVPVEGGLI ELFRSKHVPN DQRTIETLIS RLGVIVEHEF HENDMKSRVN SYHFHQIVPK 180 LELLFPVQQP VMSSGNGKAK HKIGKEQYHS KNLVTERNRR KRIKDGLYTL RALVPRISKM 240 DKASIVGDAI DYIKELEKNV KELQEELKEL EEQECKVNDG EMEVCKPKRA YESSTQMYSK 300 AKTRVSNVND SKNEVEVEVE VHQIGAHDFL LKIICNKKPD GFLKIMETID SLGLEVIDIN 360 VTTCNGRVLN VLNLEAKGKE VVAKSLKDSL LTSWSALKLE

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MRFLFNTLES LRPLTESKAW DYCVVWMFDD DPSGFIKWIG CCCSGSSHGV CKNVKEETDE  60
LELNTPYLCK DTYVKHSVRT KACEKLAVIP SSLPLYPGIH GEVAMSKQPF LLSNDSLGTQ  120
LIVPVEGGLI ELFRSKHVPN DQRTIETLIS RLGVIVEHEF HENDMKSRVN SYHFHQIVPK  180
LELLFPVQQP VMSSGNGKAK HKIGKEQYHS KNLVTERNRR KRIKDGLYTL RALVPRISKM  240
DKASIVGDAI DYIKELEKNV KELQEELKEL EEQECKVNDG EMEVCKPKRA YESSTQMYSK  300
AKTRVSNVND SKNEVEVEVE VHQIGAHDFL LKIICNKKPD GFLKIMETID SLGLEVIDIN  360
VTTCNGRVLN VLNLEAKGKE VVAKSLKDSL LTSWSALKLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733905.1	0.0	transcription factor ABORTED MICROSPORES-like
TrEMBL	A0A2J6KF90	0.0	A0A2J6KF90_LACSA; Uncharacterized protein