PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011205
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YB
Protein Properties Length: 152aa    MW: 17283.2 Da    PI: 4.2351
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676382PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1201e-3730125396
      NF-YB   3 eqdrflPianvsrimkk..vlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                +qd f+  a + ri++k  vlPa+aki+kd+ +t qecvs fisf+tseasd+c++++r++++gddll a+ tlGfedyv+pl++yl+kyre+e e
  Lsa011205  30 DQDLFMHPASILRIIRKgkVLPADAKIAKDTIQTYQECVSLFISFITSEASDNCRKDERRSLTGDDLLEAMETLGFEDYVKPLEAYLEKYREIEDE 125
                79999*9********95449*************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-3530146IPR009072Histone-fold
SuperFamilySSF471138.38E-2731136IPR009072Histone-fold
PfamPF008081.8E-1237100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-126482No hitNo description
PRINTSPR006151.4E-1283101No hitNo description
PRINTSPR006151.4E-12102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAEEGPWSSD ESWSGDLSPR SPSSNVLGLD QDLFMHPASI LRIIRKGKVL PADAKIAKDT  60
IQTYQECVSL FISFITSEAS DNCRKDERRS LTGDDLLEAM ETLGFEDYVK PLEAYLEKYR  120
EIEDELLRSL KDHDESVRKE GVQLQPDQDN TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-2924121297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744949.11e-109nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_023744950.11e-109nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_023744951.11e-109nuclear transcription factor Y subunit B-8-like isoform X1
SwissprotQ8VYK42e-38NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A251UBF14e-41A0A251UBF1_HELAN; Putative histone-fold protein
TrEMBLA0A2J6JRC74e-41A0A2J6JRC7_LACSA; Uncharacterized protein
STRINGXP_009767971.16e-41(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]