PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011203
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 322aa    MW: 34971.6 Da    PI: 9.9253
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684800PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-30658PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31251308359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh 
  Lsa011203 251 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGDHNHA 308
                99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.8E-17200247IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-33237308IPR003657WRKY domain
PROSITE profilePS5081130.664244310IPR003657WRKY domain
SuperFamilySSF1182906.93E-27246308IPR003657WRKY domain
SMARTSM007745.6E-38249309IPR003657WRKY domain
PfamPF031063.8E-27251307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAVDLIMGF RNTTSDETNA VQEAASGLES VQKLIRLLSQ SQSQQQNQSP ADYKAVADVA  60
VTKFKRVISL LGRPSRELTG HARFRRAPVN HGGYLNHNQT IMKDHDQDDV VSDEGENKVY  120
CPTPIQQVPF VPPPPPAAPA TGNQPAVFQR KDSLPKTISF SYSPAVSRAS SFMSSLTGDS  180
DGKQLSAGGK PPLCSSSCLK RKCSSSENGA SGKCSGGSTG RCHCSKRRKL RMKRVIRVKA  240
ISMKLADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA LDDPSMLIVT  300
YEGDHNHALS VAETSGLILE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21237309273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761446.10.0probable WRKY transcription factor 7
SwissprotQ9STX02e-85WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2J6LIY10.0A0A2J6LIY1_LACSA; Uncharacterized protein
STRINGXP_008384448.11e-126(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-74WRKY DNA-binding protein 7