PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011148
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 328aa    MW: 36207.8 Da    PI: 6.1663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690491PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27776PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20154204256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a+++a+ kl+ge
  Lsa011148 154 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDSAEEAALAYDNAAYKLRGE 204
                59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.80E-34153213No hitNo description
Gene3DG3DSA:3.30.730.102.0E-32154212IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23154212IPR016177DNA-binding domain
PROSITE profilePS5103223.406154211IPR001471AP2/ERF domain
SMARTSM003805.5E-38154217IPR001471AP2/ERF domain
PRINTSPR003671.1E-10155166IPR001471AP2/ERF domain
PfamPF008474.2E-14155204IPR001471AP2/ERF domain
PRINTSPR003671.1E-10177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEFWNTTGGF QQSSAGGELM EALEPFYKSA SVDYQNTLSF SSFSPSPSTS YSCASSSFLS  60
SSYSYPSSYF SPSPSSSTTQ QQFGSYPDCY LHGFSTPDPF YYEQPGSTSG LNQFTPIQIH  120
QIQAQIHFPK NGTQFSPKPV PMKQSGSPPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  180
LGTFDSAEEA ALAYDNAAYK LRGENARLNF PHLRHNWSQT GGDYKPLHSS VEAKLQEICQ  240
ILAEGKSIDG CKKSRQSSGK SKKATEQAEV VKVAGSESDG EGVSGCGDSS PSSGLTFADF  300
SVEESAWCDS ENFSLEKFPS YEIDWDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21153211160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760875.10.0ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E45e-83RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2J6LK780.0A0A2J6LK78_LACSA; Uncharacterized protein
STRINGXP_009615540.13e-95(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-61related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]