PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011055
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 565aa    MW: 63101.8 Da    PI: 5.2474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-24971PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4393.3e-1341975652373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +elLl+cA+ v+++d   a++l++ l+ ++s +g+p +Rl ay++e+L arl++s+s++yk+ +++e +     e ++++++++e++P++kf++l aN a
  Lsa011055 197 KELLLACAKSVAENDSITANWLMSVLRPMVSVSGEPAHRLGAYMLEGLVARLSSSGSSIYKTRNCKEPT---GNELFSYMRVLYEACPYFKFGYLSANGA 293
                689*****************************************************************9...999************************* PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+++e+++HiiDf+i qG QW++L+qaLasRp+gpp+lRiTgv+++++   +   ++ +g+rLa++Ae++++pf+f+  +  + +++e ++L + pg
  Lsa011055 294 IAEAMKNENKIHIIDFQIAQGSQWVTLIQALASRPGGPPTLRITGVDDSTNAyaRGGGVNIIGQRLANLAESCNIPFQFHG-IPVSGSEVEASHLGIVPG 392
                ************************************************998899999************************.68899************* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E+laVn++++lh+++desv+  ++rd++L+l+k+lsPkvv++veqe++ n+++F++rf e+l+yy+a+f+s++++lpr++ +ri+vE+++l+r+ivn++a
  Lsa011055 393 ESLAVNFAFMLHHMPDESVDPLNHRDRLLRLIKGLSPKVVTLVEQESNVNTAPFFHRFQETLNYYTAIFESIDVTLPRDHLQRINVEQHCLARDIVNIIA 492
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                cegaer+erhe l+kW++r+++aGFkp+pls+ +++++k+ll+ ++ + yr+ee++g+l+lgW++r Lv+ +aW
  Lsa011055 493 CEGAERVERHELLGKWKSRFTMAGFKPYPLSTLVNSTIKALLESYSHK-YRLEERDGALFLGWSNRDLVASCAW 565
                **********************************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.437170547IPR005202Transcription factor GRAS
PfamPF035141.2E-131197565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
AGIAVDASYY GFQAQSIIFS SKSIEKTLEI EVQNRIQQKF FDEKPTLEAD VTQILEGKIS  60
MQNYYQTPVE NMDRNLYPSD LNQGIRFSVQ TSEFGNNSSS TASFSSNGSS ISQQDSHSYI  120
PDTYHSPDYT YTSHVSRVGF TDTNTDDLEY RLRELETAML GTDQDFLESY NGSSSWGETN  180
QTISDTMSEM ISRGNFKELL LACAKSVAEN DSITANWLMS VLRPMVSVSG EPAHRLGAYM  240
LEGLVARLSS SGSSIYKTRN CKEPTGNELF SYMRVLYEAC PYFKFGYLSA NGAIAEAMKN  300
ENKIHIIDFQ IAQGSQWVTL IQALASRPGG PPTLRITGVD DSTNAYARGG GVNIIGQRLA  360
NLAESCNIPF QFHGIPVSGS EVEASHLGIV PGESLAVNFA FMLHHMPDES VDPLNHRDRL  420
LRLIKGLSPK VVTLVEQESN VNTAPFFHRF QETLNYYTAI FESIDVTLPR DHLQRINVEQ  480
HCLARDIVNI IACEGAERVE RHELLGKWKS RFTMAGFKPY PLSTLVNSTI KALLESYSHK  540
YRLEERDGAL FLGWSNRDLV ASCAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-652005658374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766353.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2J6L8D90.0A0A2J6L8D9_LACSA; Uncharacterized protein
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]